View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_18 (Length: 296)
Name: NF16623_low_18
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 63 - 286
Target Start/End: Original strand, 44887283 - 44887506
Alignment:
| Q |
63 |
gtcttattaacgaacagaagatcgttggttgtgtgtgtaccatccttgacacgacagaaattaaggaaataagaatttcatctattaccgagttttgaat |
162 |
Q |
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| T |
44887283 |
gtcttattaacgaacagaagatcgttggttgtgtgtgtaccatccttgacacgacagaaattaaggaaataagaatttcatctattaccgagttttgaat |
44887382 |
T |
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| Q |
163 |
cccacaaaattaaatcccaataattcatcgaaagtacatgagttgtttatgcagttctctggtgtacaatgcctgcattactggtgtgttattacatatt |
262 |
Q |
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| T |
44887383 |
cccacaaaattaaatcccaataattcatcgaaagtacatgagttgtttatgcagttctctggtgtacaatgcctgcattactggtgtattattacatatt |
44887482 |
T |
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| Q |
263 |
ttacgaaatccatttgtgcctatg |
286 |
Q |
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| T |
44887483 |
ttacgaaatacatttgtgcctatg |
44887506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 44887236 - 44887268
Alignment:
| Q |
20 |
gatcatgcccacaacaactgtcgctatttgtgc |
52 |
Q |
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| T |
44887236 |
gatcatgcccacaacaactgtcgctatttgtgc |
44887268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 28556478 - 28556417
Alignment:
| Q |
132 |
taagaatttcatctattaccgagttttgaatcccacaaaattaaatcccaataattcatcga |
193 |
Q |
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| T |
28556478 |
taagaattccatctattacggaggtttgagtcccacaaaattaaatcccaataagtcatcga |
28556417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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