View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_20 (Length: 286)
Name: NF16623_low_20
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_20 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 47518607 - 47518484
Alignment:
| Q |
66 |
tgtgtcacattagtggattgttttctaattattagtttgaatacattacatttgttacaggggaggaacctggatacaaccattatttgggtctaaataa |
165 |
Q |
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| T |
47518607 |
tgtgtcacattagtggattgttttctaattattagtttgaatacattacatttgttacatgggaggaacctggatacaaccattatttaggtctaaataa |
47518508 |
T |
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| Q |
166 |
gttgtaatattgttcacttataac |
189 |
Q |
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| T |
47518507 |
gttgtaatattgttcacttctaac |
47518484 |
T |
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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 11831252 - 11831175
Alignment:
| Q |
191 |
gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtct |
268 |
Q |
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| T |
11831252 |
gtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaatcaaacaaactattggaaagtaatttgtct |
11831175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 37130523 - 37130584
Alignment:
| Q |
191 |
gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccatt |
252 |
Q |
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| T |
37130523 |
gtaaagaataatgaaaactcaactattaatgaatcaaatcaagacaaatcaaaaaaaccatt |
37130584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 11831134 - 11831182
Alignment:
| Q |
191 |
gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaat |
239 |
Q |
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| T |
11831134 |
gtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaat |
11831182 |
T |
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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 41318923 - 41319027
Alignment:
| Q |
182 |
cttataacagtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgcct |
281 |
Q |
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||||| || ||||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||||| ||||| |
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| T |
41318923 |
cttattactgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgcaatgcct |
41319022 |
T |
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| Q |
282 |
taata |
286 |
Q |
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||||| |
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| T |
41319023 |
taata |
41319027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 6128592 - 6128498
Alignment:
| Q |
191 |
gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgccttaat |
285 |
Q |
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| T |
6128592 |
gtaaagaatcaagaagattcatcaagtaatggatcaaatcaagacaagtcaaacaaaccattggaaaacaatttatctgaatgcattaccttaat |
6128498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 6127853 - 6127945
Alignment:
| Q |
193 |
aaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgccttaat |
285 |
Q |
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| T |
6127853 |
aaagaatcaagaagattcatcaagtaatggatcaaattaagacaagtcaaacaaaccattgaaaaacaatttatctgaacgcattgccttaat |
6127945 |
T |
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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 7495705 - 7495614
Alignment:
| Q |
191 |
gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgcctt |
282 |
Q |
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| T |
7495705 |
gtaaagaatcatgaagattcctcaatcaatagatcaaatgaaaacaaatcaaacaaaccattagaaaataatttgtctgaatgcattgcctt |
7495614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 19143602 - 19143663
Alignment:
| Q |
191 |
gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccatt |
252 |
Q |
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| T |
19143602 |
gtaaagaatcaagaagattcatcaagtaatgattcaaatcaagacaagtcaaacaaaccatt |
19143663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 19108633 - 19108682
Alignment:
| Q |
203 |
gaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccatt |
252 |
Q |
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| T |
19108633 |
gaagattcatcaagtaatggatcaaatcaagacaagtcaaacaaaccatt |
19108682 |
T |
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 44524167 - 44524100
Alignment:
| Q |
219 |
atgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgccttaata |
286 |
Q |
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| T |
44524167 |
atgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgtaatgccttaata |
44524100 |
T |
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