View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_22 (Length: 267)
Name: NF16623_low_22
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 41830394 - 41830147
Alignment:
| Q |
18 |
caacatagaaactaaccctaaccattctgattattattttgatgacataaagataaacaatatgcttagtaactgcaatattattgaaagcaataataat |
117 |
Q |
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| T |
41830394 |
caacatagaaactaaccctaaccattctgattattattttgatgacataaagataaacaatatgcttagtaactgcaatattattgaaagcaataataat |
41830295 |
T |
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| Q |
118 |
gaaattgaaagtaggggtg---tagtggagaatttatttcaagaacaattcaacttgggagaatgggattttgaggagttgatgaaagatgtttcctcct |
214 |
Q |
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| T |
41830294 |
aaaattgaaagtaggggtgaagtagtggagaatttatttcaagaacaattcaacttgggagaatgggattttgaggagttgatgaaagatgtttcctcct |
41830195 |
T |
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| Q |
215 |
ttttattttcttgatttttcattctgatccaataatatctgtgctcct |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
41830194 |
ttttattttcttgatttttcattctgatccaataatatttgtgttcct |
41830147 |
T |
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