View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_23 (Length: 264)
Name: NF16623_low_23
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 20172721 - 20172593
Alignment:
| Q |
10 |
catcatcatcctgcaaaagatagctcattgctccatgcaaaacaccgacttctccttttgttaacgtagcggcatgcttgccactttcaaggcctaatcc |
109 |
Q |
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| T |
20172721 |
catcatcatcctgcaaaagatagctcattgctccatgcaaaactccaacttctcccttcgttaatgtagcggcgtgcttgccactttcaaggcctaaccc |
20172622 |
T |
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| Q |
110 |
agaagcttccactccaatcaacctaacat |
138 |
Q |
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| T |
20172621 |
agaagcctccactccaatcaacctaacat |
20172593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 20172413 - 20172328
Alignment:
| Q |
164 |
cccaaaatgtaatgtgttgtctccacattagtcacccaatcccttatagcttccgatgtagcgtctttaagcgtagcagttcctgc |
249 |
Q |
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| T |
20172413 |
cccaaaatgtaatgtgtagtctccacattagtcacccaatcccttatagcttccgatgtagcgtctttcagcgtagcagttcctgc |
20172328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 18404142 - 18404270
Alignment:
| Q |
10 |
catcatcatcctgcaaaagatagctcattgctccatgcaaaacaccgacttctccttttgttaacgtagcggcatgcttgccactttcaaggcctaatcc |
109 |
Q |
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| T |
18404142 |
catcatcatcctgcagcagatagctcatagctccatgcaaaacaccaacttctccctttgtcaacgtagcggcatgcttgccactgttgaggccaaagcc |
18404241 |
T |
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| Q |
110 |
agaagcttccactccaatcaacctaacat |
138 |
Q |
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| T |
18404242 |
agcagcttccacaccaattagcctaacat |
18404270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 18404450 - 18404532
Alignment:
| Q |
164 |
cccaaaatgtaatgtgttgtctccacattagtcacccaatcccttatagcttccgatgtagcgtctttaagcgtagcagttcc |
246 |
Q |
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| T |
18404450 |
cccaaaatgtaatgagttgtttcaacattagtcacccagtctctaatagcctctgatgtagcatccttaagtgtagcagttcc |
18404532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 20172537 - 20172505
Alignment:
| Q |
135 |
acatgctactagaatatctggcttccctcccca |
167 |
Q |
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| T |
20172537 |
acatgctactagaatatctggcttccctcccca |
20172505 |
T |
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