View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_24 (Length: 244)
Name: NF16623_low_24
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_24 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 29196229 - 29196003
Alignment:
| Q |
18 |
tacacctgcaaaactgtcttctatcaccacctatggacttttctagactaagaaaattgacaactcttgtgttgcatctagttgttatagaaaaacatat |
117 |
Q |
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| T |
29196229 |
tacacctgcaaaactgtcttctatcaccacctatggacttttctagactaagaaaattgacaactcttgtgttgcatctagttgttatagaaaaacatat |
29196130 |
T |
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| Q |
118 |
gcttttgggtttattttctaacggcgtcaatcttgcagacctcacacttaacaactgcaaatttgattctgacttaaacataacttgtccaacactctgt |
217 |
Q |
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| T |
29196129 |
gcttttgggtttattttctaacggcgtcaatcttgcagacctcacacttaacaactgcaaatttgattctgacttaaacataacttgtccaacactctgt |
29196030 |
T |
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| Q |
218 |
catttgaacatagtcgatcataagcgc |
244 |
Q |
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| T |
29196029 |
catttgaacatagtcgatcataagcgc |
29196003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 29204226 - 29204439
Alignment:
| Q |
18 |
tacacctgcaaaactgtcttctatcaccacctatggacttttctagactaagaaaattgacaactcttgtgttgcatctagttgttata--gaaaaacat |
115 |
Q |
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| T |
29204226 |
tacacctacaaaattgtcttatatcaccacctatggacttttctagtctac-aaaattgacaactcttgtgttgcatctagttgttatatagagaaacat |
29204324 |
T |
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| Q |
116 |
atgcttttgggtttattttctaacggcgtcaatcttgcagacctcacacttaacaactgcaaatttgattctgacttaaacataacttgtccaacactct |
215 |
Q |
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| T |
29204325 |
atgcttttgggtctattt-ctaacggcatcaatcttgtatccctcacacttcaaaactgtgaatttgattctgacttaaacataactagtccaacactct |
29204423 |
T |
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| Q |
216 |
gtcatttgaacatagt |
231 |
Q |
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| T |
29204424 |
gtcatttgaacgtagt |
29204439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 36744935 - 36744854
Alignment:
| Q |
20 |
cacctgcaaaactgtcttctatcaccacctatggacttttctagactaagaaaattgacaactcttgtgttgcatctagttg |
101 |
Q |
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||||| |||||||||||| ||| | ||||||| |||| ||| || ||| ||| |||| |||||||||||| |||||||||| |
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| T |
36744935 |
cacctacaaaactgtcttgtattagaacctatgaacttatctggattaaaaaacttgagaactcttgtgttccatctagttg |
36744854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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