View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_25 (Length: 237)
Name: NF16623_low_25
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_25 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8315086 - 8315304
Alignment:
| Q |
1 |
gcgaagaaccttgaaaatgcttcacctcttgaaataatggataaggcgcttgagaaatttggcaatgatattgctattgctttcaggttgattatttatt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8315086 |
gcgaagaaccttgaaaatgcctcacctcttgaaataatggacaaggcgcttgagaagtttggcaatgatattgctattgctttcaggttgattatttatt |
8315185 |
T |
|
| Q |
101 |
cttagtgtgcttttgaatgattttgtcgtgtacaatttgtttatggttttgttgggtttgcttgatcatgtgagtggttttaggttgattttattattct |
200 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
8315186 |
cttagtgtgcttttgaatgattttgttgtgtagaatttgtttatggtttttttgggtttgattaatcatgtgagtggttttaggttgattttattattct |
8315285 |
T |
|
| Q |
201 |
taggcttttgattgatttt |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
8315286 |
taggcttttgattgatttt |
8315304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 8144 - 7978
Alignment:
| Q |
7 |
aaccttgaaaatgcttcacctcttgaaataatggataaggcgcttgagaaatttggcaatgatattgctattgctttcag-----gttgattatttattc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
8144 |
aaccttgaaaatgcttcacctcttgaaataatggata-ggcgcttgagaaatttggcaatgatattactattgctttcgggttgagttgattatttattc |
8046 |
T |
|
| Q |
102 |
ttagtgtgcttttgaatgattttgtcgtgtacaatttgtttatggttttgttgggtttgcttgatcat |
169 |
Q |
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||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| |
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| T |
8045 |
ttagtgtgcttttgaatgattttgttatgtagaatttgttcatggttttgttgggtttgcttgatcat |
7978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 9325627 - 9325461
Alignment:
| Q |
7 |
aaccttgaaaatgcttcacctcttgaaataatggataaggcgcttgagaaatttggcaatgatattgctattgctttcag-----gttgattatttattc |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
9325627 |
aaccttgaaaatgcttcacctcttgaaataatggata-ggcgcttgagaaatttggcaatgatattactattgctttcgggttgagttgattatttattc |
9325529 |
T |
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| Q |
102 |
ttagtgtgcttttgaatgattttgtcgtgtacaatttgtttatggttttgttgggtttgcttgatcat |
169 |
Q |
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||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| |
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| T |
9325528 |
ttagtgtgcttttgaatgattttgttatgtagaatttgttcatggttttgttgggtttgcttgatcat |
9325461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 2236697 - 2236575
Alignment:
| Q |
1 |
gcgaagaaccttgaaaatgcttcacctcttgaaataatggataaggcgcttgagaaatttggcaatgatattgctattgctttcaggttgatta-tttat |
99 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2236697 |
gcgaaaaactttgaaaatgcttcacctcttgaaataatggacagggcgcttgagaaatttggcaatgatattgctattgctttcaggttgattattttat |
2236598 |
T |
|
| Q |
100 |
tcttagtgtgcttttgaatgatt |
122 |
Q |
| |
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||| ||||||||| ||||||||| |
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| T |
2236597 |
tctaagtgtgcttctgaatgatt |
2236575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 2236576 - 2236454
Alignment:
| Q |
82 |
ttcaggttgattattt-attcttagtgtgcttttgaatgattttgtcgtgtacaatttgtttatggttttgttgggtttgcttgatcatgtgagtggttt |
180 |
Q |
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|||||||||||||||| ||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2236576 |
ttcaggttgattattttattctaagtgtgcttctgaatgattttgttgtgtaaaatttgtttatggttttgttgggtttgcttgatcatgcgagtggttt |
2236477 |
T |
|
| Q |
181 |
taggttgattttattattcttag |
203 |
Q |
| |
|
|||||||||| ||||||||||| |
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| T |
2236476 |
caggttgatttgattattcttag |
2236454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 34806537 - 34806415
Alignment:
| Q |
82 |
ttcaggttgattattt-attcttagtgtgcttttgaatgattttgtcgtgtacaatttgtttatggttttgttgggtttgcttgatcatgtgagtggttt |
180 |
Q |
| |
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|||||||||||||||| ||||| ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
34806537 |
ttcaggttgattattttattctaagtgtgcttctgaatgattttgttgtgtagaatttgtttatcgttttgttgggtttgcttgatcatgcgagtggttt |
34806438 |
T |
|
| Q |
181 |
taggttgattttattattcttag |
203 |
Q |
| |
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|||||||||| ||||||||||| |
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| T |
34806437 |
caggttgatttgattattcttag |
34806415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 34806658 - 34806536
Alignment:
| Q |
1 |
gcgaagaaccttgaaaatgcttcacctcttgaaataatggataaggcgcttgagaaatttggcaatgatattgctattgctttcaggttgatta-tttat |
99 |
Q |
| |
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||||| ||| ||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34806658 |
gcgaaaaactttgaaaatgcttcacctgttgaaataatggacagggcgcttaagaaatttggcaatgatattgctattgctttcaggttgattattttat |
34806559 |
T |
|
| Q |
100 |
tcttagtgtgcttttgaatgatt |
122 |
Q |
| |
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||| ||||||||| ||||||||| |
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|
| T |
34806558 |
tctaagtgtgcttctgaatgatt |
34806536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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