View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_26 (Length: 229)
Name: NF16623_low_26
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 16181075 - 16180877
Alignment:
| Q |
18 |
agtcccatcccaatttcgcattgattaactccaaattgtcctgttactggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatccta |
117 |
Q |
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| T |
16181075 |
agtcccatcccaatttcgcattgattaactccaaattgtcctgttactggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatccta |
16180976 |
T |
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| Q |
118 |
taggtttaacacctcttccaaaggcttcacattgtgatg-----tgtacatgttcatcagcacaattagacacaatgtttgtgcaaacaccttctacct |
211 |
Q |
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| T |
16180975 |
taggtttaacacctcttccaaaggcttcacattgtgatggacaatatacatgttcatgagcacaattagccacaatgtttgtgcaaacaccttcaacct |
16180877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 16226153 - 16225955
Alignment:
| Q |
18 |
agtcccatcccaatttcgcattgattaactccaaattgtcctgttactggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatccta |
117 |
Q |
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| T |
16226153 |
agtcccatcccaatttcgcattgattaactccaaattgtcctgttacttgatgtgcgtaagtacatgtgcataagttgtagaagtcacaactcgatccta |
16226054 |
T |
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| Q |
118 |
taggtttaacacctcttccaaaggcttcacattgtgatg-----tgtacatgttcatcagcacaattagacacaatgtttgtgcaaacaccttctacct |
211 |
Q |
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| T |
16226053 |
taggtttaacacctcttccaaaggcttcacattgtgatggacaatgtacatgttcatcagcacaattagccacaatgtttgtgcaaacaccttctacct |
16225955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 16207378 - 16207256
Alignment:
| Q |
18 |
agtcccatcccaatttcgcattgattaactccaaattgtcctgttactggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatccta |
117 |
Q |
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| T |
16207378 |
agtcccatcccaatactgcattgattaactccaaattgtcctgttactggatgttcataagaacatgtgcataagttgtagaagtcacaattcgtgctta |
16207279 |
T |
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| Q |
118 |
taggtttaacacctcttccaaag |
140 |
Q |
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| T |
16207278 |
taggtttagcaccttttccaaag |
16207256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 16215741 - 16215664
Alignment:
| Q |
67 |
gatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaaggctt |
144 |
Q |
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| T |
16215741 |
gatgatcgtaagtacaagtgcataaattgtagaagtcacaattcgtgcctataagtttaacaccttttccaaaggctt |
16215664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 16211510 - 16211438
Alignment:
| Q |
72 |
tcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaaggctt |
144 |
Q |
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| T |
16211510 |
tcgtaagtacatgtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttccaacggctt |
16211438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 16220727 - 16220656
Alignment:
| Q |
67 |
gatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaa |
138 |
Q |
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| T |
16220727 |
gatgatcgtaagtacaggtgcataagttgtagaagtcacaattcgtgcctataagtttagcaccacttccaa |
16220656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 16223138 - 16223062
Alignment:
| Q |
64 |
ctggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaag |
140 |
Q |
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| T |
16223138 |
ctggatgttcgaaagtacaagtgcataggttatagaagtcacaattatattctaaaagtttagcacctcttccaaag |
16223062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 16223029 - 16222991
Alignment:
| Q |
168 |
atcagcacaattagacacaatgtttgtgcaaacaccttc |
206 |
Q |
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| T |
16223029 |
atcagcacaattagccacaacgtttgtgcaaacaccttc |
16222991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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