View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_27 (Length: 220)
Name: NF16623_low_27
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 25572305 - 25572172
Alignment:
| Q |
79 |
ttgaatttgaattgagtgaggtcgggtaatgagaattttgtctgcagaattttcactatcaaggtgaaagagagattttccaatgtgaa----------- |
167 |
Q |
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| T |
25572305 |
ttgaatttgaattgagtgaggtggggtaatgagaatt--gtctgcaaaattttcactatcaaggtgaaagagagattttccaacgtgaaaacagtgaatg |
25572208 |
T |
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| Q |
168 |
attctgaaaagaggagagtttgagtgctgggcttag |
203 |
Q |
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| T |
25572207 |
attttgaaaagaggagagtttgagtgctgggcttag |
25572172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 26006773 - 26006640
Alignment:
| Q |
79 |
ttgaatttgaattgagtgaggtcgggtaatgagaattttgtctgcagaattttcactatcaaggtgaaagagagattttccaatgtgaa----------- |
167 |
Q |
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| T |
26006773 |
ttgaatttgaattgagtgaggtggggtaatgagaatt--gtctgcaaaattttcactatcaaggtgaaagagagattttccaacgtgaaaacagtgaatg |
26006676 |
T |
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| Q |
168 |
attctgaaaagaggagagtttgagtgctgggcttag |
203 |
Q |
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| T |
26006675 |
attttgaaaagaggagagtttgagtgctgggcttag |
26006640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 25572573 - 25572516
Alignment:
| Q |
16 |
agggagagagtgagagaataagataatggttctatagtttgaacatgaacatggatca |
73 |
Q |
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| T |
25572573 |
agggagagagtgagagattaagataatggttctataatttgaacatgaacatggatca |
25572516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 26007041 - 26006984
Alignment:
| Q |
16 |
agggagagagtgagagaataagataatggttctatagtttgaacatgaacatggatca |
73 |
Q |
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| T |
26007041 |
agggagagagtgagagattaagataatggttctataatttgaacatgaacatggatca |
26006984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 26125441 - 26125405
Alignment:
| Q |
168 |
attctgaaaa-gaggagagtttgagtgctgggcttag |
203 |
Q |
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| T |
26125441 |
attctgaaaatgaggagagtttgagtgctgggcttag |
26125405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 45048287 - 45048226
Alignment:
| Q |
16 |
agggagagagtgagagaataagataatggttctatagtttgaacatgaacatggatcaggag |
77 |
Q |
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| T |
45048287 |
agggagagagtgagagaataagataatggttctatagtttcaacatgaacatggatcaggag |
45048226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 45048085 - 45048047
Alignment:
| Q |
79 |
ttgaatttgaattgagtgaggtcgggtaatgagaatttt |
117 |
Q |
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| T |
45048085 |
ttgaatttgaattgagtgaggtggggtaatgagaatttt |
45048047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 45048025 - 45047990
Alignment:
| Q |
168 |
attctgaaaagaggagagtttgagtgctgggcttag |
203 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
45048025 |
attctgaaaataggagagtttgagtgctgggcttag |
45047990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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