View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_28 (Length: 218)
Name: NF16623_low_28
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 31423999 - 31424180
Alignment:
| Q |
18 |
gtttaggtagggaggtggatgttttttggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgt |
117 |
Q |
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| T |
31423999 |
gtttaggtagggaggtggatgtttttt-------tggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccat |
31424091 |
T |
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| Q |
118 |
cgtcgctagctcttggtgccttttggttgttttgtgtatgggtgcttgagtctgggtggttttgagttgagccttttccttttctgatg |
206 |
Q |
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| T |
31424092 |
cgtcgctagctcttggtgccttttggttgttttgtgtatgggtgcttgagtctgggtggttttgagttgagccttttccttttctgatg |
31424180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 24712273 - 24712462
Alignment:
| Q |
19 |
tttaggtagggaggtggatgtttt-ttggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttg-tcttgggtctgtatccg |
116 |
Q |
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| T |
24712273 |
tttaggtagggaggtggatgttttattggtgttgttgtgggtggtagtgagctcttggtgtttctgttgtaggctgcctttgtttttgggtccatatccg |
24712372 |
T |
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| Q |
117 |
tcgtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgcttgagtctgggtggtttt-gagttgagccttttccttttctgat |
205 |
Q |
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| T |
24712373 |
tcgtcgctagctcttggtg-cttttagttgattttgtgtttggttgcttgagtgcgggtggttttcgagctgagccttttccttctctgat |
24712462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 31503685 - 31503540
Alignment:
| Q |
20 |
ttaggtagggaggtggatgttttt-tggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtc |
118 |
Q |
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| T |
31503685 |
ttaggtaggaaggtggatgtttttatggtgttttggtggatggtggtgagctctagatgtttctattgtttgccgcctctgttttgagtccatatccgcc |
31503586 |
T |
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| Q |
119 |
gtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgct |
163 |
Q |
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| T |
31503585 |
atcgctagctcttgttgcattttggttgcttttgtatttgggtgct |
31503540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 17820158 - 17820059
Alignment:
| Q |
102 |
ttgggtctgtatccgtcgtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgcttgagtctgggtggtttt-gagttgagccttttccttt |
199 |
Q |
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| T |
17820158 |
ttgggtccatatctgtcgtcgctaactcttggtgc-ttttggttgattttgtgtttgggagcttgagtgtgggtggttttcgagcttagccttttccttt |
17820060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 3679077 - 3679149
Alignment:
| Q |
18 |
gtttaggtagggaggtggatgttttttggtgttttggtggatggtagtgtactcttggtgtttctgttgtagg |
90 |
Q |
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| T |
3679077 |
gtttaggtagggaggtgaatgtttaatgatgtttttgtgggtggtggtgagctattggtgtttctgttgtagg |
3679149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 5746424 - 5746519
Alignment:
| Q |
68 |
actcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagctcttggtgccttttggttgttttgtgtatgggtgct |
163 |
Q |
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| T |
5746424 |
actctttgtgtttctgttgttgatcgcctttgtgttggatccatatccgtcgtcgctagctcttgttgcgtttgggttgctttgtgtttgggtgct |
5746519 |
T |
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