View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_3 (Length: 558)
Name: NF16623_low_3
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Complemental strand, 41915381 - 41914878
Alignment:
| Q |
16 |
ttttgaacaacccaacaagactccattacgtatattgagataattgnnnnnnnnnnnnnnnnccataatgttgagtctattcataaagatgaagattttg |
115 |
Q |
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| T |
41915381 |
ttttgaacaacccaacaagactccattacgtatatcgagataattgaaaaagggaaaagaa--cataatgttgagtgtattcataaagatgaagattttg |
41915284 |
T |
|
| Q |
116 |
ctcattctgcaatacaaaaatttagccgtggcattaaccattttaccatttcattaaccnnnnnnntgtatgttcttaaccactttttaacatgaatctc |
215 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
41915283 |
ctctttctccaatacaaaaatttagccgtggcattaaccattttaccacttcattaaccaaaaaaatgtatgttcctaaccactttttaacatgaatctc |
41915184 |
T |
|
| Q |
216 |
attaaccattttgactctttcattaacaactaaaatgcaagtcatgaaccacttattttacaaatttcaaaagaatgacattacacacatttatgtaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41915183 |
attaaccattttgactctttcattaacaactaaaatgcaagtcatgaaccacttattttacaaatttcaaaagaatgacattacacacatttatgtaaaa |
41915084 |
T |
|
| Q |
316 |
taagtatttaatgtaaaataatctcgtgcttaatgaagtaatcaaaatgtttaatgagatatgtctaatatgttcaaaaagttatcaacaacatacattt |
415 |
Q |
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||||| |||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41915083 |
taagtgtttaatgtgaaataattttgtggttaatgaagtaatcaaaatgtttaatgagatatgtctaatatgttcaaaaagttatcaacaacatacattt |
41914984 |
T |
|
| Q |
416 |
ttaggtgaatgaaatgacgaaactgattaacaacacaacttaaattttgtattagaattaaaaatacttatctttataaaagaactttaacatatatgac |
515 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
41914983 |
ttaggtgaatgaaatgccgaaattgattaacaacacaactcaaattttgtattagaattaaaaatactcatctttataaaagaactttgacatatatgac |
41914884 |
T |
|
| Q |
516 |
tttttt |
521 |
Q |
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|||||| |
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| T |
41914883 |
tttttt |
41914878 |
T |
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