View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_31 (Length: 210)
Name: NF16623_low_31
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 43130922 - 43131101
Alignment:
| Q |
15 |
agacaaagactagcagattgtgcaattgggttcggtaagaatgccattggtggtaaaaatggtaaaatctacgtcgtaacagattccggtgacgatgatc |
114 |
Q |
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| T |
43130922 |
agacaaaggctagcagattgtgcaattgggttcggtaagaatgccattggtggtaaaaatggtaaaatctacgtcgtaacagattccggtgacgacgatc |
43131021 |
T |
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| Q |
115 |
aggtgacaccaaaacccggtacacttcgtttcgctgtgattcaagacgaaccattatggataatctttgcaagagacatg |
194 |
Q |
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| T |
43131022 |
cagtgactccaaaacccggtacacttcgtttcgctgtgattcaagatgaaccattatggataatctttgcaagagacatg |
43131101 |
T |
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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 7593894 - 7593797
Alignment:
| Q |
16 |
gacaaagactagcagattgtgcaattgggttcggtaagaatgccattggtggtaaaaatggtaaaatctacgtcgtaacagattccggtgacgatgat |
113 |
Q |
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| T |
7593894 |
gacaaagactagctgattgtgcaattggatttggaaaagatgcaattggtggtaaaaatggtaaaatctacattgtaactgattcaggtgatgatgat |
7593797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 34288928 - 34288752
Alignment:
| Q |
18 |
caaagactagcagattgtgcaattgggttcggtaagaatgccattggtggtaaaaatggtaaaatctacgtcgtaacagattccggtgacgatgatcagg |
117 |
Q |
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| T |
34288928 |
caaaggctagcagattgtgcaattgggttcggcaagaatgccattggtggaaagaacggtaagatttacgttgtaaccgatgcgagcgatgacaatccgg |
34288829 |
T |
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| Q |
118 |
tgacaccaaaacccggtacacttcgtttcgctgtgattcaagacgaaccattatggataatctttgcaagagacatg |
194 |
Q |
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| T |
34288828 |
tgaccccaaagcctggaacactccgccacgccgtgatccaagtggaaccgttatggataatttttgccagagacatg |
34288752 |
T |
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