View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_5 (Length: 532)
Name: NF16623_low_5
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 3391830 - 3391376
Alignment:
| Q |
1 |
caaatgcttgaaaagttacttacaacggagtaaattaatatagatgttacgagagaaactttcataaaatgaatattgtcaaaaatatatttatttcaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3391830 |
caaatgcttgaaaagttacttacaacggagtaaat----atagatgttacgagagaaactttcataaaatgaatattgtcaaaaatatatttatttcaaa |
3391735 |
T |
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| Q |
101 |
aaatccaaatgctccacataagagagaaactcttatagattgaatatcataaaaaatttatttnnnnnnntcctgatgttccacgtaatcaaattagcaa |
200 |
Q |
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| T |
3391734 |
aaatccaaatgctccacataagagagaaactctcatagattgaatatcataaaaaatttattttaaaaaatccagatgttccacgtaatcaaattagcaa |
3391635 |
T |
|
| Q |
201 |
gggttctgaaatcatatacgcaaaaccgttaaaatacaaattaaaacatagtacatccaataatcaaagtacttaaagaccaagtcaaaatcaaatcaag |
300 |
Q |
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|||||| |||||||||||| |||||||||||||||| | || ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
3391634 |
gggttcggaaatcatatactcaaaaccgttaaaataaacatgaaaacatagtacatccaataatcaaagtatttaaagtccaagtcaaaatcaaatcaag |
3391535 |
T |
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| Q |
301 |
gttttcaagccgacccggtcaagctaacccactttattaactctagttgaaattccaattttcacatgcagggtcttgcatcataacatatattgggact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3391534 |
gttttcaagccgacccggtcaagctaacccactttattcactctagttgaaattccaattttcacatgcagggtcttgcatcataacatatattgggact |
3391435 |
T |
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| Q |
401 |
ctaaatttgtccttattggatccaaaactctttagatatttgttggaccgatttgcctt |
459 |
Q |
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| T |
3391434 |
ctaaatttgtccttattggatccaaaactctttagatatttgttggaccgatttgcctt |
3391376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 458 - 527
Target Start/End: Complemental strand, 3391358 - 3391292
Alignment:
| Q |
458 |
ttgttcatagtgagaaataaacaaagataaaggggggtccaaaactagtataaaataagatgaaagagat |
527 |
Q |
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| T |
3391358 |
ttgttcatagtgagaaataaacaaagataaaggagggaccaaaac---tatcaaataagatgaaagagat |
3391292 |
T |
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