View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16623_low_6 (Length: 514)
Name: NF16623_low_6
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16623_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 72 - 498
Target Start/End: Complemental strand, 37398766 - 37398340
Alignment:
| Q |
72 |
gcagtttttcatgtatatatttttagttacttactaccaatgtccacaagtaaatataagactgagaatcagatcatcaaaaccaatggtaaatttcagt |
171 |
Q |
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| T |
37398766 |
gcagtttttcatgtatttatttttagtttctttctaccaatgtccataattaaatataagactgagaatcagatcatcaaaacccatggtaaatttcagt |
37398667 |
T |
|
| Q |
172 |
tatgaactttcaaaaataaagaaaaatatttcttaaaagaaattaatatttgtgatctatcttgaagtctaaaaatgcattattcaatacatctaaaaaa |
271 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
37398666 |
tatgaactttcaaaaataaagaaaaatattccttaaaagaaattaatatatgtggtctatcttaaagtctaaacatgcattattcaatacatctaaaaaa |
37398567 |
T |
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| Q |
272 |
tagatttctttaatataattgtgaccatataatgtatttgcagttgataatatcaaacatagttacattcttcttatttttgaaaattaaaaaatattag |
371 |
Q |
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| T |
37398566 |
tagatttctttaatataatagtgaccatataatatatttgcagttgataatatcaaacatagttacattcttcttatttttgaaaaataaaaaatattag |
37398467 |
T |
|
| Q |
372 |
aaactctattgatacttccaacgagttgattctcgatttactatcatattcattattaaaccgtgaactgaatgattatcaattcaattaattggttaag |
471 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37398466 |
aaactctattgatacttccaacaagttgattctcgatttactatcgtagtcattattaaaccgtgaactgaatgattaccaattcaattaattggttaag |
37398367 |
T |
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| Q |
472 |
tctagtttttaaaacattggtccaaac |
498 |
Q |
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| T |
37398366 |
tctagtttttaaaacattggtccaaac |
37398340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 37644363 - 37644429
Alignment:
| Q |
134 |
tgagaatcagatcatcaaaaccaatggtaaatttcagttatgaactttcaaaaataaagaaaaatat |
200 |
Q |
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| T |
37644363 |
tgagaatcagatcatcaaaattaatggtaaatttcaattatgaactttcaaaaataaagaaaaatat |
37644429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 404
Target Start/End: Original strand, 37644433 - 37644524
Alignment:
| Q |
306 |
tatttgcagttgataatatcaaacatagttacattcttcttatttttgaaaattaaaaaatattagaaactctattgatacttccaacgagttgattct |
404 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||| |||||||| |
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| T |
37644433 |
tatttgcagttgataatatcaaacatatttacattcttcttattttt-aaaaataaaaaatataa------ctattgatacttccaacgaattgattct |
37644524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 37370627 - 37370571
Alignment:
| Q |
129 |
aagactgagaatcagatcatcaaaaccaatggtaaatttcagttatgaactttcaaa |
185 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37370627 |
aagattgagaatcagatcatcaaaatcaatggtaaatttcagttatgaactttcaaa |
37370571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 37388880 - 37388784
Alignment:
| Q |
309 |
ttgcagttgataatatcaaacatagttacattcttcttatttttg-aaaattaaaaaatattagaaactctattgatacttccaacgagttgattct |
404 |
Q |
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|||||||||||||||| | ||||| || |||||||||||||||| |||| |||||||||| | ||| |||||||||||||||||||| |||||||| |
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| T |
37388880 |
ttgcagttgataatatgacacatatttgcattcttcttatttttttaaaaataaaaaatataaaaaattctattgatacttccaacgaattgattct |
37388784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37398836 - 37398802
Alignment:
| Q |
1 |
acagattaaacatcagttttacactttttctatat |
35 |
Q |
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| T |
37398836 |
acagattaaacatcagttttacactttttctatat |
37398802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 485
Target Start/End: Original strand, 37644535 - 37644580
Alignment:
| Q |
440 |
tgaatgattatcaattcaattaattggttaagtctagtttttaaaa |
485 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
37644535 |
tgaatgacaatcaattcaattaattggttaaatctagtttttaaaa |
37644580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 14557130 - 14557187
Alignment:
| Q |
306 |
tatttgcagttgataatatcaaacatagttacattcttcttatttttgaaaattaaaaa |
364 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||| |
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| T |
14557130 |
tatttgcagttgataatatcaaacata-tcacattcttcttatttttaaaaataaaaaa |
14557187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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