View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16623_low_8 (Length: 471)

Name: NF16623_low_8
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16623_low_8
NF16623_low_8
[»] chr1 (3 HSPs)
chr1 (314-459)||(41864479-41864624)
chr1 (122-275)||(41864690-41864843)
chr1 (27-74)||(41864890-41864937)
[»] chr2 (1 HSPs)
chr2 (122-159)||(26451950-26451987)
[»] chr8 (1 HSPs)
chr8 (122-159)||(13861358-13861395)
[»] chr4 (1 HSPs)
chr4 (122-159)||(52526654-52526691)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 314 - 459
Target Start/End: Complemental strand, 41864624 - 41864479
Alignment:
Q  314 ataaagaacccttcgtatgaatgttaactcttcatatctgtgtgctttctctttgcatcggtttgttttgttttctcaagaattttctccttacatgttt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41864624 ataaagaacccttcgtatgaatgttaactcttcatatctgtgtgctttctgtttgtatcggtttgttttgttttctcaagaattttctccttacatgttt 41864525  T
Q  414 tacattagtttattgtagcttttgtgataattcttcttcccctttg 459  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  41864524 tacattagttcattgtagcttttgtgataattcttcttcccctttg 41864479  T

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Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 122 - 275
Target Start/End: Complemental strand, 41864843 - 41864690
Alignment:
Q  122 gcataaagtggaatcaaatgaagttgaatggcggggctaaggagcacaaaaaagagtgggtttgaataatttgtttacgaagaaacacaagcttggagcc 221  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| ||    
T  41864843 gcataaagtggaaacaaatgaagttgaatggcggggctaaggagcacaaaaaagagaggggctgaataatttgtttacgaagaaacacaagcttggaacc 41864744  T
Q  222 accaacttgaaccatccccttttggaagcaatatagttgagttcatttattgag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41864743 accaacttgaaccatccccttttggaagcaatatagttgagttcatttattgag 41864690  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 41864937 - 41864890
Alignment:
Q  27 gtttttgttctatgactaatttccactgtgttctaacttattgatgag 74  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41864937 gtttttgttctatgactaattcccactgtgttctaacttattgatgag 41864890  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 26451950 - 26451987
Alignment:
Q  122 gcataaagtggaatcaaatgaagttgaatggcggggct 159  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26451950 gcataaagtggaatcaaatgaagttgaatggcggggct 26451987  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 13861395 - 13861358
Alignment:
Q  122 gcataaagtggaatcaaatgaagttgaatggcggggct 159  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  13861395 gcataaagtggaaccaaatgaagttgaatggtggggct 13861358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 52526691 - 52526654
Alignment:
Q  122 gcataaagtggaatcaaatgaagttgaatggcggggct 159  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  52526691 gcataaagtggaaccaaatgaagttgaatggtggggct 52526654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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