View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16623_low_9 (Length: 438)

Name: NF16623_low_9
Description: NF16623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16623_low_9
NF16623_low_9
[»] chr2 (3 HSPs)
chr2 (31-317)||(21551876-21552162)
chr2 (347-422)||(21551806-21551881)
chr2 (111-220)||(21655616-21655725)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 31 - 317
Target Start/End: Complemental strand, 21552162 - 21551876
Alignment:
Q  31 aaataatgtatttttctacgctatccnnnnnnnnattgcatcttattattgctccattgaacataaaaggtgttaacttagacaatgttccattcgagaa 130  Q
    ||||||||||||| ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21552162 aaataatgtatttgtctacgctatccttttttttattgcatcttattattgctccattgaacataaaaggtgttaacttagacaatgttccattcgagaa 21552063  T
Q  131 aaactatgctcctttatgggggaaagaaaatatacgaattctcgacaaaagccaagaagttcaaattaccttgaatcaaaattcaggtaaggtgtagaga 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21552062 aaactatgctcctttatgggggaaagaaaatatacgaattctcgaccaaagccaagaagttcaaattaccttgaatcaaaattcaggtaagatgtagaga 21551963  T
Q  231 tataaattatattactatgaagaaaatagtgnnnnnnntgtgaagatataaacataannnnnnnctttaatatcattgataagtgtt 317  Q
    ||||||||||||||||||||||||||| |||       ||| |||||||||||||||       |||||||||||||||||||||||    
T  21551962 tataaattatattactatgaagaaaattgtgaaaaaaatgtaaagatataaacataatttttttctttaatatcattgataagtgtt 21551876  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 21551881 - 21551806
Alignment:
Q  347 agtgttttacggtgatttgattttaacaactgtttttgtcccacaggttctggttttcagtctctaaggaaatttg 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21551881 agtgttttacggtgatttgattttaacaactgtttttgtcccacaggttctggttttcagtctctacggaaatttg 21551806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 21655616 - 21655725
Alignment:
Q  111 gacaatgttccattcgagaaaaactatgctcctttatgggggaaagaaaatatacgaattctcgacaaaagccaagaagttcaaattaccttgaatcaaa 210  Q
    |||||||||||||||  | ||||||||||||||||||||||| |||||||||| | ||||||| || |||| |  ||||||||| |||| |||||||||     
T  21655616 gacaatgttccattcatgcaaaactatgctcctttatgggggcaagaaaatatgcaaattctcaaccaaagtcgggaagttcaacttacattgaatcaag 21655715  T
Q  211 attcaggtaa 220  Q
    | ||||||||    
T  21655716 aatcaggtaa 21655725  T

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