View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16624_high_11 (Length: 359)
Name: NF16624_high_11
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_high_11 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 63797 - 64142
Alignment:
| Q |
1 |
ttacataattcagtgcaatta---gtgtcggtgtcagacaccggaacacacctaatcttcatagattactacataaaggatgatgatgacatattgctat |
97 |
Q |
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| T |
63797 |
ttacataattcagtgcaattacaagtgtcggtgtcagacaccggaacacacctaatcttcatagattactacataaaggatgatgatgacatattgctat |
63896 |
T |
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| Q |
98 |
gaacattgcatcccagtaatgaaaatcagagtcaaaaactcatagtcgaatgagaaattgaaacacagtcagaagctcagagagcgagcagtgtcattct |
197 |
Q |
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| T |
63897 |
gaacattgcatcccagtaatgaaaatcagagtcaaaaactcatagtcgaatgagaaattgaaacacagtcagaagctcagatagcgagcagtgtcattcc |
63996 |
T |
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| Q |
198 |
aagtcaatgcaag-tgtgaattaagcaagtatcatgaacataaaccaaacacttaatttatatcactttcatttcttatcagatctgaaacaaaagaaaa |
296 |
Q |
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| T |
63997 |
aagtcaatgcaagttgtgaattaagcaagtatcatg-acctaaaccaaacacttaatttatatcattttcaattcttatcagatctgaaacaaaagaaaa |
64095 |
T |
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| Q |
297 |
caatatcaaacacataccatttgtttttgcttttgttgtgaagatat |
343 |
Q |
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| T |
64096 |
caatatcaaacacataccatttgtttttgcttttgttgtgaagatat |
64142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 342
Target Start/End: Complemental strand, 22900595 - 22900474
Alignment:
| Q |
220 |
agcaagtatcatgaacataaaccaaacacttaatttatatcactttcatttcttatcagatctgaaacaaaagaaaacaatatcaaacacataccatttg |
319 |
Q |
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|||||||||||||| |||||||||| |||| ||||||| | || ||||||||||| ||| || ||||||| ||||||||| ||||||||||| |||| |
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| T |
22900595 |
agcaagtatcatgaccataaaccaa-cactgaatttatgttgctaccatttcttatctgatatgtaacaaaataaaacaataagaaacacataccgtttg |
22900497 |
T |
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| Q |
320 |
tttttgcttttgttgtgaagata |
342 |
Q |
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|| || |||||| ||| |||||| |
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| T |
22900496 |
ttgtttcttttgctgtcaagata |
22900474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 25452180 - 25452130
Alignment:
| Q |
4 |
cataattcagtgcaatta-gtgtcggtgtcagacaccggaacacacctaat |
53 |
Q |
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| T |
25452180 |
cataattcagtgtaattatgtgtcggtgtcagacaccggaacacgcctaat |
25452130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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