View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16624_high_12 (Length: 315)
Name: NF16624_high_12
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 5901561 - 5901352
Alignment:
| Q |
1 |
tctaaaaaacctgaatccttcggcaaaggcaaagtcactccaatccagatcgctttcatcgttgacagatacctctgtgacaacaatttcaccgaaactc |
100 |
Q |
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| T |
5901561 |
tctaaaaaacctgaatccttcggcaaaggcaaagtcactccaatccagatcgctttcatcgttgacagatacctctgtgacaacaatttcaccgaaactc |
5901462 |
T |
|
| Q |
101 |
gtaaattgtttcggatcgaagcttcttctttcatcgctaattcacccatcaacgaggtttttccactaccctttttgttaattcttgttttcattcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5901461 |
gtaaattgtttcggatcgaagcttcttctttcatcgctaattcacccatcaacgaggtttttccactaccctttttgttaattcttgttttcattcattt |
5901362 |
T |
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| Q |
201 |
tcgctattgg |
210 |
Q |
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|||||||||| |
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| T |
5901361 |
tcgctattgg |
5901352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 300
Target Start/End: Complemental strand, 5901290 - 5901262
Alignment:
| Q |
272 |
attcaaatttctcaaatgggtcattttct |
300 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5901290 |
attcaaatttctcaaatgggtcattttct |
5901262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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