View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16624_high_2 (Length: 557)
Name: NF16624_high_2
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Original strand, 28690618 - 28691147
Alignment:
| Q |
7 |
tggagaagcataggaacttggaccctttttcccccaaaatagcagccaacctaagctcaagttgaacccatattcttggaataaaggtgggtcaatttca |
106 |
Q |
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| T |
28690618 |
tggagaagcagaggaacttggaccctttttcccccaaaatagcagccaacctaagctcaagttgaacccatattcttggaataaaggtgggtcaatttca |
28690717 |
T |
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| Q |
107 |
a---attgataactttcacaatgcattgcaataatggtagttcaattcattgtaaatttgttaatttgagataaactttgtatatcctgtacaattttaa |
203 |
Q |
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| T |
28690718 |
ataaattgataactttcacaatgcattgcaaaaatggtagttcaattcattgtaaatt--------tgagataaactttgtatatcttgtacaattttaa |
28690809 |
T |
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| Q |
204 |
aaataaactaaatcttttctacagctgcaaatcttttgtttcttgaatcccctgctggagtgggattttcttacaccaacaccaccagtgatataagtga |
303 |
Q |
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| T |
28690810 |
aaataaactaaatcttttctacagctgcaaatcttttgtttcttgaatcccctgctggagtgggattttcttacaccaacaccaccagtgatataagtga |
28690909 |
T |
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| Q |
304 |
acttggtgacaccattacaggtaacaataattctatatatcatctaaggattgatacaatttttattagtactttcacttaatgtgatttattgatgaat |
403 |
Q |
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| T |
28690910 |
acttggtgacaccattacaggtaacaataattctatatatcatctaaggattgatacaatttttattagtactttcacttaatgtgatttattgatgaat |
28691009 |
T |
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| Q |
404 |
actttgtttcattgaccagctaaggattcacacacattcctcatcaattggtttaaaagatttcctcaatttaaatcacatgatttctacattgctggtg |
503 |
Q |
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| T |
28691010 |
actttgtttcattgaccagctaaggattcacacacattcctcatcaattggtttaaaagatttcctcaattcaaatcacatgatttctacattgctggtg |
28691109 |
T |
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| Q |
504 |
aaagctatgcaggtatatttaacttgtaaaataatttt |
541 |
Q |
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| T |
28691110 |
aaagctatgcaggtatatttaacttgtaaaataatttt |
28691147 |
T |
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