View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16624_high_21 (Length: 227)
Name: NF16624_high_21
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34255470 - 34255250
Alignment:
| Q |
1 |
caagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaaatcatctgttagagcatttcctacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34255470 |
caagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaaatcatctgttagagcatttcctacc |
34255371 |
T |
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| Q |
101 |
tgcagcaggcagtgaaatatactattgattgggttctaagaaaagtcttcgcctaatgactagtcgtggaatttcacatccnnnnnnnnnngctatttat |
200 |
Q |
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|||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||| | |||||||||||||||| ||||||||| |
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| T |
34255370 |
tgcagcagacagtgaaatatactattgattgagtt-aaagaaaagtctttccctaatgacttgcggtggaatttcacatcc-tttttttctgctatttat |
34255273 |
T |
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| Q |
201 |
tctccacatctatgcaatcttgc |
223 |
Q |
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|||||||||| |||||||||||| |
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| T |
34255272 |
tctccacatcaatgcaatcttgc |
34255250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 26635782 - 26635675
Alignment:
| Q |
1 |
caagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaaatcatctgttagagcatttcctacc |
100 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26635782 |
caagagcttgaatgtttgatccgaaatcataccatttgtccacaaaaactcgaaaatccccaattgatcatggaaatcatctgttacagcatttcctacc |
26635683 |
T |
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| Q |
101 |
tgcagcag |
108 |
Q |
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|||||||| |
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| T |
26635682 |
tgcagcag |
26635675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 26642980 - 26642873
Alignment:
| Q |
1 |
caagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaaatcatctgttagagcatttcctacc |
100 |
Q |
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|
||||||||||||||||||||| || ||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26642980 |
caagagcttgaatgtttgatccgagatcataccatttgtccacataaactcgaaaatccccaattgatcatggaaatcatctgttagagcatttcccacc |
26642881 |
T |
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| Q |
101 |
tgcagcag |
108 |
Q |
| |
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|||||||| |
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| T |
26642880 |
tgcagcag |
26642873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 26628204 - 26628100
Alignment:
| Q |
4 |
gagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaaatcatctgttagagcatttcctacctgc |
103 |
Q |
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|||||||||||||||||| |||||||||||| | | |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26628204 |
gagcttgaatgtttgatccgaaatcataccactggaccacataaactggaacatccccaattgatcactgaaatcatctgttagagcatttcctacctgc |
26628105 |
T |
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| Q |
104 |
agcag |
108 |
Q |
| |
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||||| |
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| T |
26628104 |
agcag |
26628100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 34256897 - 34256823
Alignment:
| Q |
1 |
caagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaa |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34256897 |
caagagcttgaatgtttgatctgaaatcataccatttgtccacataaactggaacattcccaattgatcatggaa |
34256823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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