View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16624_high_22 (Length: 226)

Name: NF16624_high_22
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16624_high_22
NF16624_high_22
[»] chr8 (12 HSPs)
chr8 (20-210)||(6424434-6424624)
chr8 (104-210)||(6363627-6363733)
chr8 (104-210)||(6352822-6352928)
chr8 (114-208)||(6321871-6321965)
chr8 (137-207)||(6391469-6391539)
chr8 (114-208)||(6332445-6332539)
chr8 (135-208)||(7459642-7459715)
chr8 (114-202)||(6289489-6289577)
chr8 (114-202)||(6275002-6275090)
chr8 (20-104)||(6352714-6352798)
chr8 (152-207)||(6410646-6410701)
chr8 (153-202)||(6370575-6370624)
[»] chr5 (1 HSPs)
chr5 (159-208)||(9604084-9604133)
[»] chr3 (1 HSPs)
chr3 (152-208)||(36744661-36744717)
[»] chr2 (1 HSPs)
chr2 (152-208)||(42693651-42693707)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 6424434 - 6424624
Alignment:
Q  20 tgctcttatgtgggaactcctgaattaattgtatcaagcaataatgttaccaattatagaaataacatattgtttacaaaatagttaacaatgctaaact 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424434 tgctcttatgtgggaactcctgaattaattgtttcaagcaataatgttaccaattatagaaataacatattgtttacaaaatagttaacaatgctaaact 6424533  T
Q  120 attaactttaccgtgagttttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcagaat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424534 attaactttaccgtgagttttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcagaat 6424624  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 6363627 - 6363733
Alignment:
Q  104 ttaacaatgctaaactattaactttaccgtgagttttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccac 203  Q
    ||||||||| ||||| ||||||||||||  ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  6363627 ttaacaatgttaaaccattaactttaccaagagtttttttatgatgtgtggattcaccccagcaatcatctcccttgcaaattcctcatcagtcatccat 6363726  T
Q  204 gcagaat 210  Q
    |||||||    
T  6363727 gcagaat 6363733  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 6352822 - 6352928
Alignment:
Q  104 ttaacaatgctaaactattaactttaccgtgagttttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccac 203  Q
    ||||||| | |||||||||| ||||||||  |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  |||     
T  6352822 ttaacaaagttaaactattagctttaccgaaagttttttgatgatgtgtgggttcaccccagcaatcatctcccttgcaaattcctcatcagtctgccat 6352921  T
Q  204 gcagaat 210  Q
    |||||||    
T  6352922 gcagaat 6352928  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 6321871 - 6321965
Alignment:
Q  114 taaactattaactttaccgtgagtt-ttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcaga 208  Q
    ||||||||||| |||||| ||| || |||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  6321871 taaactattaagtttacc-tgaattctttttataatgtgtggattcacaccagcaatcatctcccttgcaaattcttcatcagtcatccacgcaga 6321965  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 6391469 - 6391539
Alignment:
Q  137 ttttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcag 207  Q
    ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  6391469 ttttttgatgacgtttggattcacaccagcaatcatctcccttgcaaattcctcatcagtcatccatgcag 6391539  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 6332445 - 6332539
Alignment:
Q  114 taaactattaactttaccgtgagttttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcaga 208  Q
    |||||||| || ||||||   ||| ||||||| |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||    
T  6332445 taaactatcaagtttacctgaagtcttttgattatgtgtggattcacaccagcaatcatctcccttgcaaattctccatcagtcatccatgcaga 6332539  T

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Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 7459642 - 7459715
Alignment:
Q  135 agttttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcaga 208  Q
    |||||||||||||| || |||||||| ||||||||||||| |||||| |||||||||||||||||||| |||||    
T  7459642 agttttttgatgatatgaggattcaccccagcaatcatctgccttgcgaattcctcatcagtcatccatgcaga 7459715  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 6289489 - 6289577
Alignment:
Q  114 taaactattaactttaccgtgagttttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatcca 202  Q
    |||||||| || ||||||   ||| ||||||| |||||||||||||| |||||||||||||| |||| |||||| ||||||||||||||    
T  6289489 taaactatgaagtttacctgaagtcttttgataatgtgtggattcacaccagcaatcatctctcttgtaaattcttcatcagtcatcca 6289577  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 6275002 - 6275090
Alignment:
Q  114 taaactattaactttaccgtgagtt-ttttgatgatgtgtggattcactccagcaatcatctcccttgcaaattcctcatcagtcatcca 202  Q
    ||||||||||| |||||| ||| || ||||||||||||||||||| || |||||||||||||| |||| |||||| || |||||||||||    
T  6275002 taaactattaagtttacc-tgaattcttttgatgatgtgtggatttacaccagcaatcatctctcttgtaaattcttcgtcagtcatcca 6275090  T

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Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 6352714 - 6352798
Alignment:
Q  20 tgctcttatgtgggaactcctgaattaattgtatcaagcaataatgttaccaattatagaaataacatattgtttacaaaatagt 104  Q
    |||||||  |||| |||||||| ||||| | || ||||||||||||| |||||||| | |||||||||| |||||||||||||||    
T  6352714 tgctctttggtggaaactcctgtattaaatttagcaagcaataatgtcaccaattacaaaaataacataatgtttacaaaatagt 6352798  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 6410646 - 6410701
Alignment:
Q  152 tggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcag 207  Q
    ||||||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||    
T  6410646 tggattcacaccagcaattatctctcttgcgaattcctcatcagtcatccatgcag 6410701  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 6370575 - 6370624
Alignment:
Q  153 ggattcactccagcaatcatctcccttgcaaattcctcatcagtcatcca 202  Q
    |||||||| |||||||||||||  ||||||||||||||||||| ||||||    
T  6370575 ggattcacaccagcaatcatctgtcttgcaaattcctcatcagccatcca 6370624  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 9604133 - 9604084
Alignment:
Q  159 actccagcaatcatctcccttgcaaattcctcatcagtcatccacgcaga 208  Q
    |||||||||| |||||| ||| ||||||| |||||||||||||| |||||    
T  9604133 actccagcaaccatctctcttccaaattcttcatcagtcatccatgcaga 9604084  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 36744717 - 36744661
Alignment:
Q  152 tggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcaga 208  Q
    |||||| || ||||||| ||| || ||||||||||| |||||||||||||| |||||    
T  36744717 tggatttacaccagcaagcatttctcttgcaaattcttcatcagtcatccatgcaga 36744661  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 42693651 - 42693707
Alignment:
Q  152 tggattcactccagcaatcatctcccttgcaaattcctcatcagtcatccacgcaga 208  Q
    |||||| |||||||| | ||| || ||||||||||| |||||||||||||| |||||    
T  42693651 tggatttactccagctagcatttctcttgcaaattcttcatcagtcatccatgcaga 42693707  T

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