View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16624_high_5 (Length: 443)
Name: NF16624_high_5
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Complemental strand, 51060052 - 51059649
Alignment:
| Q |
14 |
agagagagataaatatttccaaatggacgtacggactatcatttatttcatttcccttcctcattcttttcttttcacacaacttttccctcctaaattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51060052 |
agagagagataaatatttccaaatggacgtacggactatcatttatttcatttcccttcctcattcttttcttttcacacaacttttccctcctaaattt |
51059953 |
T |
|
| Q |
114 |
ccaaatagattttaaaccgttggaatgtctagatatctttttcaataagtgtacgtattcaatttttactttattttattgtttaatactttgatctatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
51059952 |
ccaaatagattttaaaccgttggaatgtctagatatctttttcaataagtgtacgtattcaatttttactttattttattgtttaatactttgatccatt |
51059853 |
T |
|
| Q |
214 |
tcattcnnnnnnnaatgtccaaaggtgtcagattgataagtaattaacacaagtataacattgtttaatatggagatttggagtgagctcttttggacca |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51059852 |
tcattctttttttaatgtccaaaggtgtcagattgataagtaattaacacaagtataacattgtttaatatggagatttggagtgagctcttttggacca |
51059753 |
T |
|
| Q |
314 |
gcattacctccggatgcatgatgatgccaatacaaggatgattcaccatcatcgattagttttgtgacgactcttccatatgtttgtggatgactagtaa |
413 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51059752 |
gcattacctccggatgcatgacgatgacaataca----------accatcatcgattagttttgtgacgactctttcatatgtttgtggatgactagtaa |
51059663 |
T |
|
| Q |
414 |
taataaggtgttcc |
427 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
51059662 |
taataaggtgttcc |
51059649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 34617982 - 34618047
Alignment:
| Q |
264 |
aagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacctccggatg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34617982 |
aagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacctccggatg |
34618047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 34617838 - 34617899
Alignment:
| Q |
102 |
cctcctaaatttccaaatagattttaaaccgttggaatgtctagatatctttttcaataagt |
163 |
Q |
| |
|
||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
34617838 |
cctcctaaacttccaaatagatgttaaaccattggaatgtctagatatctttttcaacaagt |
34617899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University