View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16624_high_9 (Length: 374)
Name: NF16624_high_9
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 49104186 - 49104523
Alignment:
| Q |
15 |
attttttatttagctatgataataa---cttgggtgtattgcaatttacagaccatgatcaatgaataagtgtttcaagaaataatatacacgggacaca |
111 |
Q |
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| T |
49104186 |
attttttatttagctatgataataattacttgggtgtattgcaatttacagaccatgatcaatgaataagtgtttcaagaaataatatacgcgggacaca |
49104285 |
T |
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| Q |
112 |
aaagtataagtttattaaagttattattattaagatcaattcatagattcttctcatgtgaaaactgatcctaaggaagcaatttgtggataatgactgg |
211 |
Q |
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| T |
49104286 |
aaagtataagtttattaaagttattattattaagatcaattcatagattcttctcatgtgaaaactgatcctaaggaagcaatttgtggataatgactgg |
49104385 |
T |
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| Q |
212 |
tttgtagtattctcttgtattatatagaagatctttgaacatatccttctcaaaattatttgtatagatcaatttgagctctctgttagtatttaacaga |
311 |
Q |
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| T |
49104386 |
tttgtagtattctcttgtattgtatagaagatctttgaacatatccttctcaaaattatttttatagatcaatttgagctctctgttagtatttaacaga |
49104485 |
T |
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| Q |
312 |
caatatcacgttttagaccatggtcgtgaccaagataa |
349 |
Q |
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| T |
49104486 |
caatatcacgttttagaccatggtcgtgaccaagataa |
49104523 |
T |
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