View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16624_low_17 (Length: 303)
Name: NF16624_low_17
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_low_17 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 23877258 - 23877551
Alignment:
| Q |
14 |
atcagaagctaaacagtttcagtagccacaatgagaaatccaagctagcaagaaagnnnnnnngtgaactttccaaatgaagttgttgaaaatttaaggt |
113 |
Q |
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| T |
23877258 |
atcagaagctaaacagtttcagtagccacaatgagaaatccaagctagcaagaaagaaaaaaagtgaactttccaaatgaagttgttgaaaatttaaggt |
23877357 |
T |
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| Q |
114 |
gtaaaaattaacaaataatgaaagtttcaagtgaagggaataatacggttgtcaacaactctagaaacaaattaggaaagaacttgttttgtagtgaaaa |
213 |
Q |
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| T |
23877358 |
gtaaatattaacaaataatgaaagtttcaagtgaagggaataatacggttgtcaacaactctagaaacaaattaggaaagaacttgttttgtagtgaaaa |
23877457 |
T |
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| Q |
214 |
aaggt---agaaacagatgtttc-cagacttatgtcacatgagctggtggtatactattgtggtctcaatgatttaataatcgtttagtttggc |
303 |
Q |
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| T |
23877458 |
aaggtagaagaaacagatgtttcacagacttatgtcacatgagctggtggtatactattgtggtctcaatgatttaataatcgtttagtttggc |
23877551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 23421787 - 23421496
Alignment:
| Q |
19 |
aagctaaacagtttcagtagccacaatgagaaatccaagctagcaagaaagnnnnnnn-gtgaactttccaaatgaagttgttgaaaatttaaggtgtaa |
117 |
Q |
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| T |
23421787 |
aagctcaacagtttcagtagccacaacgagaaatccaagctagcaagaaagaaaaaaaagtgaactt-ccaagtgaagttgttgagaacttaagttgtaa |
23421689 |
T |
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| Q |
118 |
aaattaacaaataatgaaagtttcaagtgaagggaataatacggttgtcaacaactctagaaacaaattaggaaag---aacttgttttgtagtgaaaaa |
214 |
Q |
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| T |
23421688 |
aaattaacaaataatgaaagtttcaagtgaggggaataatacggttggcaacaactctagaaaaaaagaaggaaagaacaacttgttttgcagtgaaaaa |
23421589 |
T |
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| Q |
215 |
aggtag--aaacagatgttt-ccagac-ttatgtcacatgagctggtggtatactattgtggtctcaatgatttaataatcgtttagtttggc |
303 |
Q |
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| T |
23421588 |
aggtagaaaaatagatgtttgacagactttatgtcacatgagctggtggtatactattgcagtctcaatgatttaataattgtttggtttggc |
23421496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 23877601 - 23877635
Alignment:
| Q |
269 |
gtggtctcaatgatttaataatcgtttagtttggc |
303 |
Q |
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| T |
23877601 |
gtggtctcaatgatttaataatcgtttagtttggc |
23877635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 37943270 - 37943374
Alignment:
| Q |
91 |
tgaagttgttgaaaatttaaggtgtaaaaattaacaaataatgaaagtttcaagtgaagggaataatacggttgtcaacaactctagaaacaaattagga |
190 |
Q |
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|||||||||||| || |||||||||| | |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| || ||| |||| |
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| T |
37943270 |
tgaagttgttgagaacttaaggtgtagagattaacaaataaagaaagtttcaagtgaagggaataatatggttggcaacaactctaggaaaaaagaagga |
37943369 |
T |
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| Q |
191 |
aagaa |
195 |
Q |
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| T |
37943370 |
aagaa |
37943374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 37943416 - 37943457
Alignment:
| Q |
244 |
tcacatgagctggtggtatactattgtggtctcaatgattta |
285 |
Q |
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| T |
37943416 |
tcacatgagctggtggtatactattgtggactcaatgattta |
37943457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 37943198 - 37943248
Alignment:
| Q |
19 |
aagctaaacagtttcagtagccacaatgagaaatccaagctagcaagaaag |
69 |
Q |
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| T |
37943198 |
aagctcaacagtttcagtagccatgatgagaaatcgaagctaggaagaaag |
37943248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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