View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16624_low_18 (Length: 279)

Name: NF16624_low_18
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16624_low_18
NF16624_low_18
[»] chr3 (2 HSPs)
chr3 (42-263)||(35647951-35648170)
chr3 (8-42)||(35647876-35647910)
[»] chr5 (2 HSPs)
chr5 (54-263)||(10367307-10367515)
chr5 (54-263)||(38479608-38479816)
[»] chr4 (1 HSPs)
chr4 (54-263)||(30817664-30817872)
[»] chr1 (1 HSPs)
chr1 (54-263)||(46242022-46242230)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 42 - 263
Target Start/End: Original strand, 35647951 - 35648170
Alignment:
Q  42 attgaaccatagtaagttacagttcattgaatactgctatgagaaattgtttggtaatgatgaatgagttaaaattgcaaatgaggttcttgttaagatg 141  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||     
T  35647951 attgaaccatagtaagttacagttcattgaatactactatgagaagttgtttggtaatggtgaaggagttaaaattgcaaatgaggttcttgttaagatt 35648050  T
Q  142 aaacnnnnnnnctctagaataactcatgtcctctaatgagctaagtggttcatcttcagaaaggtctggtagagatagtctaatcattccttcaagtgaa 241  Q
    ||||        |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  35648051 aaactttttt--tctagaataactcatgtcctctaatgagctaagtggttcatcttcacaaaggtatggtagagatagtctaatcattccttcaagtgaa 35648148  T
Q  242 ttagaagattttagtaattatc 263  Q
    ||||||||||||||||||||||    
T  35648149 ttagaagattttagtaattatc 35648170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 35647876 - 35647910
Alignment:
Q  8 ggtttggcatatacttacaaaacaacttatccaaa 42  Q
    ||||||||||||||| |||||||||||||||||||    
T  35647876 ggtttggcatatactaacaaaacaacttatccaaa 35647910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 54 - 263
Target Start/End: Complemental strand, 10367515 - 10367307
Alignment:
Q  54 taagttacagttcattgaatactgctatgagaaattgtttggtaatgatgaatgagttaaaattgcaaatgaggttcttgttaagatgaaacnnnnnnnc 153  Q
    ||||||||||||  ||||||||||||||| |||  ||||||||||||||| | |||| |||||||| |||||| |||||| |||||||||||            
T  10367515 taagttacagtttgttgaatactgctatgtgaagctgtttggtaatgatggaggagtgaaaattgctaatgagattcttgataagatgaaacttttttt- 10367417  T
Q  154 tctagaataactcatgtcctctaatgagctaagtggttcatcttcagaaaggtctggtagagatagtctaatcattccttcaagtgaattagaagatttt 253  Q
    || |||||| ||| ||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  10367416 tcaagaatatctcttgtcctctaatgagctaagtgtttcatcttcacaaaggtctgttagaggtagtccaatcattccttcaagtgaattagaagatttt 10367317  T
Q  254 agtaattatc 263  Q
    ||||||||||    
T  10367316 agtaattatc 10367307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 263
Target Start/End: Complemental strand, 38479816 - 38479608
Alignment:
Q  54 taagttacagttcattgaatactgctatgagaaattgtttggtaatgatgaatgagttaaaattgcaaatgaggttcttgttaagatgaaacnnnnnnnc 153  Q
    ||||||||||||  ||||||||||||||| |||  ||||||||||||||| | |||| |||||||| |||||| |||||  |||||||||||            
T  38479816 taagttacagtttgttgaatactgctatgtgaagctgtttggtaatgatggaggagtgaaaattgctaatgagattcttaataagatgaaacttttttt- 38479718  T
Q  154 tctagaataactcatgtcctctaatgagctaagtggttcatcttcagaaaggtctggtagagatagtctaatcattccttcaagtgaattagaagatttt 253  Q
    || |||||| ||| ||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  38479717 tcaagaatatctcttgtcctctaatgagctaagtgtttcatcttcacaaaggtctgttagaggtagtccaatcattccttcaagtgaattagaagatttt 38479618  T
Q  254 agtaattatc 263  Q
    ||||||||||    
T  38479617 agtaattatc 38479608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 54 - 263
Target Start/End: Original strand, 30817664 - 30817872
Alignment:
Q  54 taagttacagttcattgaatactgctatgagaaattgtttggtaatgatgaatgagttaaaattgcaaatgaggttcttgttaagatgaaacnnnnnnnc 153  Q
    ||||||||||||  ||||||||||||||| |||  ||||||||||||||| | |||| |||||||| |||||| |||||| |||||||||||            
T  30817664 taagttacagtttgttgaatactgctatgtgaagctgtttggtaatgatggaggagtgaaaattgctaatgagattcttgataagatgaaacttttttt- 30817762  T
Q  154 tctagaataactcatgtcctctaatgagctaagtggttcatcttcagaaaggtctggtagagatagtctaatcattccttcaagtgaattagaagatttt 253  Q
    || |||||| ||| ||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  30817763 tcaagaatatctcttgtcctctaatgagctaagtgtttcatcttcacaaaggtctgatagaggtagtccaatcattccttcaagtgaattagaagatttt 30817862  T
Q  254 agtaattatc 263  Q
    ||||||||||    
T  30817863 agtaattatc 30817872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 54 - 263
Target Start/End: Complemental strand, 46242230 - 46242022
Alignment:
Q  54 taagttacagttcattgaatactgctatgagaaattgtttggtaatgatgaatgagttaaaattgcaaatgaggttcttgttaagatgaaacnnnnnnnc 153  Q
    ||||||||||||  ||||||||||||||| |||  ||||||||||||||| | |||| |||||||| |||||| |||||| |||||||||||            
T  46242230 taagttacagtttgttgaatactgctatgtgaagctgtttggtaatgatggaggagtgaaaattgctaatgagattcttgataagatgaaacttttttt- 46242132  T
Q  154 tctagaataactcatgtcctctaatgagctaagtggttcatcttcagaaaggtctggtagagatagtctaatcattccttcaagtgaattagaagatttt 253  Q
    || |||||| ||| ||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  46242131 tcaagaatatctcttgtcctctaatgagctaagtgtttcatcttcacaaaggtctgatagaggtagtccaatcattccttcaagtgaattagaagatttt 46242032  T
Q  254 agtaattatc 263  Q
    ||||||||||    
T  46242031 agtaattatc 46242022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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