View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16624_low_2 (Length: 577)

Name: NF16624_low_2
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16624_low_2
NF16624_low_2
[»] chr4 (5 HSPs)
chr4 (15-561)||(23828768-23829314)
chr4 (203-561)||(23819518-23819870)
chr4 (214-561)||(23832615-23832952)
chr4 (203-561)||(23824838-23825188)
chr4 (15-143)||(23820014-23820147)
[»] chr2 (3 HSPs)
chr2 (492-561)||(41442289-41442358)
chr2 (492-557)||(41448729-41448794)
chr2 (492-561)||(41459071-41459140)
[»] chr5 (1 HSPs)
chr5 (495-550)||(34150316-34150371)


Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 15 - 561
Target Start/End: Complemental strand, 23829314 - 23828768
Alignment:
Q  15 tatatacatcacttttagcagtctgattacctttatcaacaaatcagtttatactagtcactaatcaaaatgatacaattgattcttgagcaagttaatg 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23829314 tatatacatcacttttagcagtgtgattacctttatcaacaaatcagtttatactagtcactaatcaaaatgatacaattgatccttgagcaagttaatg 23829215  T
Q  115 aactcaacagacaaaagatactaaaaaagttgattaaacaacagaaattcatatacagaaagacataaaatctgtctagtagttattataccggaggcga 214  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23829214 aactcaacagacaaaagatactaaaaaagttgattaaacaacggaaattcatatacagaaagacataaaatctgtctagtagttattataccggaggcga 23829115  T
Q  215 ggtattctggagctgcatatccgtatgttagcttggtggagacatgacttttatcaaccatggacccgccctttgaatgcccaaaattagaaagttttgc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23829114 ggtattctggagctgcatatccgtatgttagcttggtggagacatgacttttatcaaccatggacccgccctttgaatgcccaaaattagaaagttttgc 23829015  T
Q  315 attataattctgcgatcaaaccagcaaggaaattttcagatatgatacataaataaatataatatattaatgtgtttttgtgtgtagaaatggatacata 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  23829014 attataattctgcgatcaaaccagcaaggaaattttcagatatgatacataaataaatataatatattaatgtgtttttgtgtgtagaaaaggacacata 23828915  T
Q  415 ctgaatctagcaagacatttgaggtattgaaatcgcggtatcttccttttgtttcagcgttgcgaagaaatttaaggcctttagcagcaccaagagcaac 514  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23828914 ctgaatctagcaagacatttgaggtattgaaatcgcggtattttccttttgtttcagcgttgcgaagaaatgtaaggcctttagcagcaccaagagcaac 23828815  T
Q  515 cttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23828814 cttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg 23828768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 203 - 561
Target Start/End: Complemental strand, 23819870 - 23819518
Alignment:
Q  203 taccggaggcgaggtattctggagctgcatatccgtatgttagcttggtggagacatgacttttatcaaccatggacccgccctttgaatgcccaaaatt 302  Q
    |||||| ||| | |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |||||  | ||||||   | ||||||||    
T  23819870 taccggtggctaagtattctggagccgcatatccgtaggttagcttggtggtgacatgacttttatcaaccgtggacaagtcctttgccaggccaaaatt 23819771  T
Q  303 agaaagttttgcattataattctgcgatcaaaccagcaaggaaattttcagatatgatacataaataaatataatatattaatgtgtttttgtgtgtaga 402  Q
    |||||||||||||||||||||||| ||||||  ||  |||||||||||||||||  || |||||||||| ||||| |||| |||      |||||||| |    
T  23819770 agaaagttttgcattataattctgtgatcaagtcaaaaaggaaattttcagatacaatgcataaataaacataatgtatttatg------tgtgtgtaca 23819677  T
Q  403 aatggatacatactgaatctagcaagacatttgaggtattgaaatcgcggtatcttccttttgtttcagcgttgcgaagaaatttaaggcctttagcagc 502  Q
    ||  || |||||| |||||||||||||||||||| || |||||||| |||||  |  ||||||||| |||   | ||||||||  ||||||||| |||||    
T  23819676 aaaagacacatacggaatctagcaagacatttgaagtcttgaaatcacggtacatcgcttttgtttgagcaccgtgaagaaatgcaaggcctttggcagc 23819577  T
Q  503 accaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg 561  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  23819576 accaacagcaaccttcaaccggaggctccaagaaagaggttgaaaatatgagcctcctg 23819518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 214 - 561
Target Start/End: Complemental strand, 23832952 - 23832615
Alignment:
Q  214 aggtattctggagctgcatatccgtatgttagcttggtggagacatgacttttatcaaccatggacccgccctttgaatgcccaaaattagaaagttttg 313  Q
    |||||||| ||||| | ||||||  | ||||||||||| |  ||||||||||||||||||| ||||  |  |||||   | |||||||| ||||||||||    
T  23832952 aggtattccggagccgtatatccagaggttagcttggtaggtacatgacttttatcaaccagggacaagttctttgccaggccaaaatttgaaagttttg 23832853  T
Q  314 cattataattctgcgatcaaaccagcaaggaaattttcagatatgatacataaataaatataatatattaatgtgtttttgtgtgtagaaatggatacat 413  Q
    ||||||||||||| ||||||  || ||||||||||||||||||  |||||||||||||  ||||||||| ||||||        ||| |||  ||  |||    
T  23832852 cattataattctgtgatcaagtcaacaaggaaattttcagatacaatacataaataaacgtaatatattcatgtgt--------gtacaaaaaga--cat 23832763  T
Q  414 actgaatctagcaagacatttgaggtattgaaatcgcggtatcttccttttgtttcagcgttgcgaagaaatttaaggcctttagcagcaccaagagcaa 513  Q
    || |||||||||||||||||||| || | ||||||||||||  || ||||||||| ||   || ||||||||  ||||||||| ||||||||||||||||    
T  23832762 acggaatctagcaagacatttgaagtctggaaatcgcggtacattgcttttgtttgagtactgtgaagaaatgcaaggcctttggcagcaccaagagcaa 23832663  T
Q  514 ccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23832662 ccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg 23832615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 203 - 561
Target Start/End: Complemental strand, 23825188 - 23824838
Alignment:
Q  203 taccggaggcgaggtattctggagctgcatatccgtatgttagcttggtggagacatgacttttatcaaccatggacccgccctttgaatgcccaaaatt 302  Q
    |||||| ||| ||||||||||||||||||||||||||  || ||  |||| ||||| | |||  |||| |  |||||||  ||||||   ||||||||||    
T  23825188 taccggtggccaggtattctggagctgcatatccgtagatttgcccggtgtagacacggcttcgatcacctgtggacccatcctttgccagcccaaaatt 23825089  T
Q  303 agaaagttttgcattataattctgcgatcaaaccagcaaggaaattttcagatatgatacataaataaatataatatattaatgtgtttttgtgtgtaga 402  Q
    | | ||||| ||||||||||||||  |||||| ||||  ||||| ||||| | ||| ||| |||||||| ||||| || | |||||  |      ||| |    
T  23825088 aaagagtttcgcattataattctgtcatcaaatcagc--ggaaactttcaaacatgttacttaaataaacataatttactcatgtggct------gtaca 23824997  T
Q  403 aatggatacatactgaatctagcaagacatttgaggtattgaaatcgcggtatcttccttttgtttcagcgttgcgaagaaatttaaggcctttagcagc 502  Q
    |||||| |||||| ||||| ||||||| |||||| || || ||||   ||||  |   ||||||||| ||  || |||| |||  ||| | ||| |||||    
T  23824996 aatggacacataccgaatccagcaagatatttgaagtcttcaaattttggtaaatcgattttgtttcggcactgtgaaggaatgcaagacatttggcagc 23824897  T
Q  503 accaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23824896 accaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg 23824838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 23820147 - 23820014
Alignment:
Q  15 tatatacatcacttttagcagtctgattacctttatcaacaaatcagtttatactagtcactaatcaaaatgat-----acaattgattcttgagcaagt 109  Q
    |||| ||| ||||||||||||| |||||||||| || ||||||||| ||| || || ||||||| | |||||||       | |||||| ||||  ||||    
T  23820147 tatacacaacacttttagcagtgtgattaccttcattaacaaatcattttgtattactcactaacccaaatgatgtttagtagttgattattgattaagt 23820048  T
Q  110 taatgaactcaacagacaaaagatactaaaaaag 143  Q
    ||||||||||||||||| ||| |||||| |||||    
T  23820047 taatgaactcaacagacgaaacatactagaaaag 23820014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 492 - 561
Target Start/End: Complemental strand, 41442358 - 41442289
Alignment:
Q  492 cctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg 561  Q
    ||||| |||||  ||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||    
T  41442358 cctttggcagcgtcaagagcaaccttcagacgaaggctccatgaaagaggttgaaaatatgatcctcctg 41442289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 492 - 557
Target Start/End: Complemental strand, 41448794 - 41448729
Alignment:
Q  492 cctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcct 557  Q
    ||||| |||||||||||||||||||||| ||  ||||||| ||| |||||||||||||||||||||    
T  41448794 cctttggcagcaccaagagcaaccttcagacagaggctccgagagagaggttgaaaatatgagcct 41448729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 492 - 561
Target Start/End: Complemental strand, 41459140 - 41459071
Alignment:
Q  492 cctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctg 561  Q
    ||||| |||||  ||||||||||||||| ||| |||||||| ||||||||||| |||||||| |||||||    
T  41459140 cctttggcagcgtcaagagcaaccttcagacggaggctccatgaaagaggttggaaatatgatcctcctg 41459071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 550
Target Start/End: Complemental strand, 34150371 - 34150316
Alignment:
Q  495 ttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaata 550  Q
    ||||||||| |||||||||||||||  || | |||||||||||| |||||||||||    
T  34150371 ttagcagcatcaagagcaaccttcattcggatgctccaagaaagtggttgaaaata 34150316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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