View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16624_low_22 (Length: 249)
Name: NF16624_low_22
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 6424747 - 6424988
Alignment:
| Q |
1 |
aaacttaagggttgatgcaccatcagatcgaaaaagttccgtgaacaatggtattgggctaacgttgctaagaaaattggtaggtagcttgattccacca |
100 |
Q |
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| T |
6424747 |
aaacttaagggttgatgcaccatcagatcgaaaaagttccgtgaacaatggtattgggctaacgttgctaagaaaattggtaggtagcttgattccacca |
6424846 |
T |
|
| Q |
101 |
tcgtaaagtgaccgcacgtcttcaaagttgttaaactctttgctaactacagatttcaaggaaggtatgatattttgagatgctgatttgagtatgaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6424847 |
tcgtaaagtgaccgcacgtcttcaaagttgttaaactctttgctaactacagatttcaaggaaggtatgatattttgagatgctgatttgagtatgaaag |
6424946 |
T |
|
| Q |
201 |
caagaaagtctgaagactttgtgtgtccaaatgcttcatctc |
242 |
Q |
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| T |
6424947 |
caagaaagtctgaagactttgtgtgtccaaatgcctcatctc |
6424988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 6353235 - 6353314
Alignment:
| Q |
163 |
aggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcttcatctc |
242 |
Q |
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| T |
6353235 |
aggtatgacattttgagatgctgatttgagtatgtaaacaagaaagtctgatgactttgtgtgtccaaaagattcatctc |
6353314 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 6364031 - 6364110
Alignment:
| Q |
163 |
aggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcttcatctc |
242 |
Q |
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| T |
6364031 |
aggtatgacattttgagatgcagatttgagtatgtgaacaagaaagtctgatgactttgtgtgtccaaatgattcatctc |
6364110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 6353075 - 6353195
Alignment:
| Q |
18 |
caccatcagatcgaaaaagttccgtgaacaatggtattgggctaacgttgctaagaaaattggtaggtagcttgattccaccatcgtaaagtgaccgcac |
117 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||||| |||| | ||| || | || ||||| ||||| |||||||| ||||| || || ||||| |
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| T |
6353075 |
caccatcagatcggaaaagttccttgaacaatggtattggactaatctggcttagtacatcagtaggaagcttaattccaccctcgtagagagagcgcac |
6353174 |
T |
|
| Q |
118 |
gtcttcaaagttgttaaactc |
138 |
Q |
| |
|
|||| |||| |||||||||| |
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| T |
6353175 |
atcttgaaaggtgttaaactc |
6353195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 7459973 - 7460093
Alignment:
| Q |
18 |
caccatcagatcgaaaaagttccgtgaacaatggtattgggctaacgttgctaagaaaattggtaggtagcttgattccaccatcgtaaagtgaccgcac |
117 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||| | ||| || | || ||||| ||||| |||||||||||||| || || || | |
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| T |
7459973 |
caccatcagttcgaaaaagttctttgaacaatggtattgggctaatctggcttagtacatcagtaggaagcttaattccaccatcgtagagagagcgtat |
7460072 |
T |
|
| Q |
118 |
gtcttcaaagttgttaaactc |
138 |
Q |
| |
|
||||||||| |||||||||| |
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|
| T |
7460073 |
atcttcaaaggtgttaaactc |
7460093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 6275392 - 6275471
Alignment:
| Q |
163 |
aggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcttcatctc |
242 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| || ||||||| ||||||||||| ||| ||||||| |||||||| |
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| T |
6275392 |
aggtatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgattcatctc |
6275471 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 6322259 - 6322338
Alignment:
| Q |
163 |
aggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcttcatctc |
242 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||| || ||||||| ||||||||||| ||| |||||||||||||||| |
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|
| T |
6322259 |
aggtatgaaactttgagaagctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgcttcatctc |
6322338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 6363871 - 6363991
Alignment:
| Q |
18 |
caccatcagatcgaaaaagttccgtgaacaatggtattgggctaacgttgctaagaaaattggtaggtagcttgattccaccatcgtaaagtgaccgcac |
117 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||||||||||||||||| | || || | || ||||| ||| |||||||||| || || || || ||||| |
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| T |
6363871 |
caccatcagttcggaaaagttccttgaacaatggtattgggctaagttcacttagtatatcagtaggaagcctgattccaccttcatagagcgagcgcac |
6363970 |
T |
|
| Q |
118 |
gtcttcaaagttgttaaactc |
138 |
Q |
| |
|
||||||||| |||||||||| |
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|
| T |
6363971 |
atcttcaaaggtgttaaactc |
6363991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 7471551 - 7471671
Alignment:
| Q |
18 |
caccatcagatcgaaaaagttccgtgaacaatggtattgggctaacgttgctaagaaaattggtaggtagcttgattccaccatcgtaaagtgaccgcac |
117 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||||||||||| ||||| || | || ||||| ||||| |||||||||||||| || || || |
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| T |
7471551 |
caccatcagttcgaaaatgttctttgaacaatggtattgggctaatcttgcttagtacatcagtaggaagcttaattccaccatcgtagagagatcgtgt |
7471650 |
T |
|
| Q |
118 |
gtcttcaaagttgttaaactc |
138 |
Q |
| |
|
||||||||| |||||||||| |
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|
| T |
7471651 |
atcttcaaaggtgttaaactc |
7471671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 6332843 - 6332922
Alignment:
| Q |
163 |
aggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcttcatctc |
242 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||| || ||||||||||||||||||| ||| ||||||| |||||||| |
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|
| T |
6332843 |
aggtataacattttgagatgctgatttcagtatataaacaagaaagtctgaagacttcaagtggccaaatgattcatctc |
6332922 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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