View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16624_low_24 (Length: 228)
Name: NF16624_low_24
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_low_24 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 34254861 - 34255084
Alignment:
| Q |
5 |
caaaaatatcaaaatcaaccaaccaattttcatgtatgccaattgaatcaaatcaaattatattaataatctttttgtgcagctgaggactctctcatat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34254861 |
caaaaatatcaaaatcaaccaaccaattttcatgtatgccaattgaatcaaatcaaattatattaataatctttttgtgcagctgaggactctctcatat |
34254960 |
T |
|
| Q |
105 |
ttctcttgaagtggtttgagcgttttcctcagtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgtgataaata |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
34254961 |
ttctcttgaagtggtttgagcgttttcctcggtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgagatagata |
34255060 |
T |
|
| Q |
205 |
aggaaactttatcatgtcatgtgt |
228 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
34255061 |
aggaaactttatcatttcatgtgt |
34255084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 26627673 - 26627874
Alignment:
| Q |
22 |
accaaccaattttcatgtatgccaattgaatcaaatcaaattatattaataat-ctttttgtgcagctgaggactctctcatatttctcttgaagtggtt |
120 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| || ||||||| |||| |||| | || |||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
26627673 |
accaaccatttttcatgtatgtcaattgaatcgaagcaaattaaattattaattcgttatgtgcagctgaggataatctcatatttctattgaagtggtt |
26627772 |
T |
|
| Q |
121 |
tgagcgttttcctcagtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgtgataaataaggaaactttatcatg |
220 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||| || |||||||| |
|
|
| T |
26627773 |
tgagcgttttccccagtataaaaacacagactttttcatcagtggtgagagctatgcaggtaaacacaaatggtgagatagataaggacac-ttatcatg |
26627871 |
T |
|
| Q |
221 |
tca |
223 |
Q |
| |
|
||| |
|
|
| T |
26627872 |
tca |
26627874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 26635247 - 26635411
Alignment:
| Q |
37 |
tgtatgccaattgaatcaaatcaaattatattaataat-ctttttgtgcagctgaggactctctcatatttctcttgaagtggtttgagcgttttcctca |
135 |
Q |
| |
|
|||||| | |||||||||||| |||||| |||||||| |||| |||||||||||||| |||||||||||| || |||||||||||||||||||| || |
|
|
| T |
26635247 |
tgtatgacgattgaatcaaattaaattaatttaataattctttatgtgcagctgaggataatctcatatttcttttaaagtggtttgagcgttttcccca |
26635346 |
T |
|
| Q |
136 |
gtataaagaaacagactttttcattagtggtgagagctatgcaggtaaatacaaatggtgtgata |
200 |
Q |
| |
|
||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
26635347 |
gtacaaaaaaacagactttttcatcagtggtgagagctatgcaggtaaacgcaaatggtgagata |
26635411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 26642475 - 26642600
Alignment:
| Q |
75 |
ctttttgtgcagctgaggactctctcatatttctcttgaagtggtttgagcgttttcctcagtataaagaaacagactttttcattagtggtgagagcta |
174 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| || |||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||| |
|
|
| T |
26642475 |
ctttatgtgcagctgaggataatctcatatttctattaaagtggtttgagcgttttccccagtacaaaaaaacagactttttcatcagtggtgagagcta |
26642574 |
T |
|
| Q |
175 |
tgcaggtaaatacaaatggtgtgata |
200 |
Q |
| |
|
||||||||| |||| ||||| |||| |
|
|
| T |
26642575 |
tgcaggtaagcacaagtggtgggata |
26642600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University