View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16624_low_8 (Length: 422)
Name: NF16624_low_8
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 212 - 403
Target Start/End: Original strand, 45722684 - 45722875
Alignment:
| Q |
212 |
tatatatatagacacataatttgagcttgagtgctttagaatcaattaatcaaagacatggttagaccacgtttcaaattgaatagtttgtgcgttggtc |
311 |
Q |
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| T |
45722684 |
tatatatatagacacataatttgagcttgagtgctttagaatcaattaatcaaagacatggttagaccacgtttcaagttgaatagtttgtgcgttggtc |
45722783 |
T |
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| Q |
312 |
atgctagaacacctcgtgttcgagcatgttctgcatcttcttttggatcaaaatttgcaaacagaactgagttttcaagcaacggagttcaa |
403 |
Q |
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| T |
45722784 |
atgctagaacacctcgtgttcgagcatgttctgcatcttcttttggatcaaaatttgcaaacagaactgagttttcaagcaacggagttcaa |
45722875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 45722458 - 45722514
Alignment:
| Q |
12 |
catcatccaaaatcttgatgctatgcacgttcaacattagtcccgcaacacactaag |
68 |
Q |
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| T |
45722458 |
catcatccaaaatcttgatgctatgcacgttcaacattagtcccacaacacactaag |
45722514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 45722575 - 45722653
Alignment:
| Q |
129 |
gtccaaagtcaagggtgtgagttgtgatgtgagtgtcacaatgaagctggccttcttcttcaattctgttccccaaatgcatgtata |
215 |
Q |
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| T |
45722575 |
gtccaaagtcaagggtgtgagttgtg-----agtgtcacaatgaagctggc---cttcttcaattatgttccccaaatgcatgtata |
45722653 |
T |
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