View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16624_low_9 (Length: 411)
Name: NF16624_low_9
Description: NF16624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16624_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 39315282 - 39315453
Alignment:
| Q |
19 |
gaggttagcactgcaaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaatctttgataatgtttgcgatccacacccaaactaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39315282 |
gaggttagcactgcaaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaatctttgataatgtttgcgatccacacccaaactaatg |
39315381 |
T |
|
| Q |
119 |
gccaatagctccataatcacctcagttaaatcattcattgcatcagagtacttttgatacaccaacctattc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39315382 |
gccaatagctccataatcacctcagttaaatcattcattgcatcagagtacttttgatacaccaacctattc |
39315453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 267 - 396
Target Start/End: Original strand, 39315523 - 39315652
Alignment:
| Q |
267 |
ttgtgtaatttgaacttatatatatggagtgaggttcttacccggattgttgaaagtcttcacccaagagagaattgacaacatcaacaacttgtgtctc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39315523 |
ttgtgtaatttgaacttatatatatggagtgaggttcttacccggattgttgaaagtcttcacccaagagagaattgacaacatcaacaacttgtgtctc |
39315622 |
T |
|
| Q |
367 |
atttttggtgttgtgtttgtacatgaaagt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39315623 |
atttttggtgttgtgtttgtacatgaaagt |
39315652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 44114037 - 44114186
Alignment:
| Q |
32 |
caaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaatctttgataatgtttgcgatccacacccaaactaatggccaatagctcca |
131 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||| ||| ||||||||||||||||| ||||||| ||||| | ||||||||||||||||| ||||||| |
|
|
| T |
44114037 |
caaggtggataatagttacatctcattattgagtcaccatcttcaaaaaatcttcgataatgcaaacgatctatccccaaactaatggccaagagctcca |
44114136 |
T |
|
| Q |
132 |
taatcacctcagttaaatcattcattgcatcagagtacttttgatacacc |
181 |
Q |
| |
|
||||||| || ||| || |||||||| ||| ||||||||||||||||| |
|
|
| T |
44114137 |
taatcactaaagataattctttcattgcttcacagtacttttgatacacc |
44114186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University