View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16625_high_1 (Length: 598)
Name: NF16625_high_1
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16625_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 580
Target Start/End: Complemental strand, 21429591 - 21429022
Alignment:
| Q |
17 |
atgcatatacattattaaataaacaaaacaaaacacctgaccattctcttgcccctt-gacttggtctcattctacactttaccatcactttctcttt-- |
113 |
Q |
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|||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | |
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| T |
21429591 |
atgcatatacattattgaataaataaaa-aaaacacctgaccattctcttgcccctttgacttggtcacattctacactttaccatcactttctctctgt |
21429493 |
T |
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| Q |
114 |
tctactacagacataaaannnnnnnnnnnnnnntc----tcaaatcccacaacaataaccctgtcatgttgaatgatcaaagagcttcaacaagccatgg |
209 |
Q |
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|| ||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21429492 |
tccactacagacataaaaacacaatatacacacacacactcaaatcccacaacaacaaccctgtcatgttgaatgatcaaagagcttcaacaagccatgg |
21429393 |
T |
|
| Q |
210 |
aagagaacataacgatgattatgatcaagaagatgaagaaattataagagaaattcatgccttaactccacctcaccctcaaacaagacaatcacaacac |
309 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| |
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| T |
21429392 |
cagagaacagaatgatgattatgatcaagaagatgaagaaattataagagaaattcatgccttaaccccacctcactctcaaagaagacaatcacaacac |
21429293 |
T |
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| Q |
310 |
agtcaccaatcatctctattttccatagctagtgagaatttcacaagtataagtagagaattcagtgctttggttcaagcaggttcaagtattgaccata |
409 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21429292 |
agtcaccaatcatctctattttccatagctaatgagaatttcacaagtataagtagagaattcagtgctttggttcaagcaggttcaagtattgaccata |
21429193 |
T |
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| Q |
410 |
acaacttaagtccaatgatgactagtactactagtaatactaatagcaatgaaagagaaagcaacaataatagtagaagctttcacaacttgttgaggat |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21429192 |
acaacttaagtccaatgatgactagtactactagtaatactaatagcaatgaaagagaaagcaacaataatattagaagctttcacaacttgttgaggat |
21429093 |
T |
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| Q |
510 |
tagagaaaatgaattgatggaagaaactaaccctttggcaattgtggctgataacaaccctttggagctgc |
580 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21429092 |
tagagaaaatgaattgatggaagaaactaaccctttggcaattgtggctgataacaaccctttggagctgc |
21429022 |
T |
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