View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16625_high_11 (Length: 238)

Name: NF16625_high_11

Description: NF16625

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16625_high_11

[»] chr4 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 124; E-Value: 6e-64

Query Start/End: Original strand, 89 - 216

Target Start/End: Complemental strand, 55067484 - 55067357

Alignment:

Q	89	cagcagtgctaaatggtgcgatgattttttcgcacacgaaaaagcagcttaacgtgcaaactcattacttagggctatattttattaaaaataacataaa	188	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	55067484	cagcagtgctaaatggtgcgatgattttttcgcacacgaaaaagcagcttaacgtgcaaactcattacttagggctatattttattaaaaataaaataaa	55067385	T

Q	189	aatgctcaaaatataatatttccattat	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55067384	aatgctcaaaatataatatttccattat	55067357	T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 122 - 179

Target Start/End: Original strand, 30330674 - 30330731

Alignment:

Q	122	acacgaaaaagcagcttaacgtgcaaactcattacttagggctatattttattaaaaa	179	Q
		\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \|\| \|\|\|\| \|\|\|\|\|\|\|\|
T	30330674	acacgaataagtagcttaacgtgcaaactcattatttaaggttaaatttcattaaaaa	30330731	T

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