View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16625_high_13 (Length: 237)
Name: NF16625_high_13
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16625_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14828200 - 14828420
Alignment:
| Q |
1 |
tcatactaaaatgagatttatgcatacacatgatataataaattagtcaacatttaaacccctattaaaaattaatagttttaaaataaattattcacat |
100 |
Q |
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| T |
14828200 |
tcatactaaaatgagatttatgcatacacatgatatcataaattagtcaacatttaaacccctattaaaaaataatagtattaaaatcaattattcacat |
14828299 |
T |
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| Q |
101 |
tttaaaatgtgatattgaagcattgtatatagttatgaactcaccctttctttgagaagaggctcctctcagttgtggcaagcttttgagggacctcaag |
200 |
Q |
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| T |
14828300 |
tttaaaatgtgatattgaagtattgtatatagttatgaactcaccctttctttgagaagagactgctatcagttgtggcaagcttttaagggacctcaag |
14828399 |
T |
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| Q |
201 |
cctggattgagacgacgattc |
221 |
Q |
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| T |
14828400 |
ctgggattgagacgacgattc |
14828420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 14827079 - 14826898
Alignment:
| Q |
1 |
tcatactaaaatgagatttatgcatacacatgatataataaattagtcaacatttaaacccctattaaaaattaatagttttaaaataaattattcacat |
100 |
Q |
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||||||||||| |||||| |||||||||||| |||||||||||||||||| || || |||||||||||||| |||| | ||||| ||||||||| | |
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| T |
14827079 |
tcatactaaaaagagattcatgcatacacataatataataaattagtcaatgttgaatcccctattaaaaatgtttagtatcaaaatcaattattca-aa |
14826981 |
T |
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| Q |
101 |
tttaaaatgtgatattgaagcattgtatatagttat----gaactcaccctttctttgagaagaggctcctctcagttgtggc |
179 |
Q |
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| T |
14826980 |
taaaaaatgagatattgaaaaattgtttctaattatatactaactcaccctttctttgagaaaaggctcctctcagttgtggc |
14826898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 6763358 - 6763461
Alignment:
| Q |
76 |
tagttttaaaataaattattcacattttaaaatgtgatattgaagcattgtatatagttat--gaactcaccctttctttgagaagaggctcctctcagt |
173 |
Q |
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| T |
6763358 |
tagtattaaaataaattattcacaaaa-aaaatgtgatattgaaacattgtatctagttatacgaactcaccctttttttgagaagaggctcctctcagt |
6763456 |
T |
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| Q |
174 |
tgtgg |
178 |
Q |
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||||| |
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| T |
6763457 |
tgtgg |
6763461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 6763134 - 6762949
Alignment:
| Q |
3 |
atactaaaatgagatttatgcatacacatgatataataaattagtcaacatttaaacccctattaaaaattaatagttttaaaataaattattcacattt |
102 |
Q |
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||||||||| |||||| ||| |||||||| ||||||||| |||||||| | |||| ||||||||||||| || |||| | |||||||||||||| ||| |
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| T |
6763134 |
atactaaaaagagattcatgtatacacataatataataagttagtcaatagttaatcccctattaaaaaatattagtatcaaaataaattattctcataa |
6763035 |
T |
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| Q |
103 |
taaa----atgtgatattgaagcattgtatatagttat----gaactcaccctttctttgagaagaggctcctctcagttgtggca |
180 |
Q |
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||| ||| ||||||||| |||||| | || |||| ||||| || |||||||||||| ||||||| ||||||||||||| |
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| T |
6763034 |
aaaaatatatgagatattgaaacattgtttctaattatatactaactcgccatttctttgagaaaaggctcccctcagttgtggca |
6762949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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