View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16625_high_3 (Length: 426)
Name: NF16625_high_3
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16625_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 220 - 421
Target Start/End: Original strand, 2038461 - 2038662
Alignment:
| Q |
220 |
gagtgtgatagtagtgataatattaaaagctgagcgtgaccgtaatagtgaatgagtgactatgagcgggagacacggtggcagtttaaatttagaaaat |
319 |
Q |
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| T |
2038461 |
gagtgtgatagtagtgataatattaaaagctgagcgtgaccgtaatagtgaatgagtgactatgagcgggagacacggtggcagtttaaatttagaaaat |
2038560 |
T |
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| Q |
320 |
ccaaacgctacaatctctttgtattataatcacttgtttggattcattcatgtcttcaaaaagttactttccaaacacatgctaggtttttgtttttgtt |
419 |
Q |
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| T |
2038561 |
ccaaacgctacaatctctttgtattataatcacttgtttggattcattcatgtcttcaaaaagttactttccaaacacatgctaggtttttgtttttgtt |
2038660 |
T |
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| Q |
420 |
tc |
421 |
Q |
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|| |
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| T |
2038661 |
tc |
2038662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 2038251 - 2038390
Alignment:
| Q |
10 |
aataataataataattgaatacagatctatgtcacatgaaaatgaaataatcatagcatagaggaaagtagatatttatgctactataagcttactgata |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2038251 |
aataataataataattgaatacagatctatgtcacatgaaaatgaaataatcatagcatagaggaaagtagatatttatgctactataagcttactgata |
2038350 |
T |
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| Q |
110 |
tattgaatattcagagcttgtaatatatcatggaaaattc |
149 |
Q |
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| T |
2038351 |
tattgaatattcagagcttgtaatatatcatggaaaattc |
2038390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 2039008 - 2039044
Alignment:
| Q |
384 |
tactttccaaacacatgctaggtttttgtttttgttt |
420 |
Q |
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| T |
2039008 |
tactttccaaacacatgctaggtttttgtttttgttt |
2039044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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