View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16625_high_4 (Length: 419)
Name: NF16625_high_4
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16625_high_4 |
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| [»] scaffold0019 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 22 - 342
Target Start/End: Original strand, 33690166 - 33690486
Alignment:
| Q |
22 |
gggctaaggtttcatgttgttttaagtgagatgcaatttaggcgggtcagaatttgaaggcatgttgatcggatagagagggaaattacacgggtagaat |
121 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
33690166 |
gggctaaggtttcatgttgttttaagagagatgcaattttggcgggtcagaatttgaaggtatgttgatcggatagagatggaaattacacgggtagaat |
33690265 |
T |
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| Q |
122 |
tccactaacaaatgaggatgacctttgcaatgatagtgtacttcaaacgtagttttcaaagaatatttctgcaatgtataaacatgaattccttcaaata |
221 |
Q |
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||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33690266 |
tccgctaacaaatgaggatgatctttgcattgatagtgtacttcaaacgtagttttcaaagaatatttctgcaatgtataaacatgaattccttcaaata |
33690365 |
T |
|
| Q |
222 |
taattgcattaattatcatgacgttaaagttttaaacttggtatataaatgtcattttgtttttgccggctacattttctatatatatgactcgtgcggc |
321 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||||| ||| || |
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| T |
33690366 |
taattgcattaattatcataacgttaaagttttaagcttggtatataaatgtcattttgtttttacctactacattttcgatatatatgactcctgcagc |
33690465 |
T |
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| Q |
322 |
agtacgggtggaaggtatagt |
342 |
Q |
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|| ||| ||||||||| |||| |
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| T |
33690466 |
agcacgagtggaaggtctagt |
33690486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 22290027 - 22289954
Alignment:
| Q |
270 |
atgtcattttgtttttgccggctacattttctatatatatgactcgtgcggcagtacgggtggaaggtatagtt |
343 |
Q |
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| T |
22290027 |
atgtcattttgtttttgccttctacattttcaatgtatatgactcgtgcggcagcacgggtgcaaggtctagtt |
22289954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 337
Target Start/End: Complemental strand, 178147 - 177832
Alignment:
| Q |
22 |
gggctaaggtttcatgttgttttaagtgagatgcaatttaggcgggtcagaatttgaaggcatgttgatcggatagagagggaaattacacgggtagaat |
121 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
178147 |
gggctaaggtttcatgttgttttaagagagatgcaatttaggagggtcagaatttgaagggatgttgatcggatagagagggaaattacacgggtagaat |
178048 |
T |
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| Q |
122 |
tccactaacaaatgaggatgacctttgcaatgatagtgtacttcaaacgtagttttcaaagaatatttctgcaatgtataaacatgaattccttcaaata |
221 |
Q |
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||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
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| T |
178047 |
tccgctaacaaatgaggatgaccttcacattgatagtgtacttcaaacgtagttttcaaacaaattttctgcaatgtataaacatgaattccctcaaata |
177948 |
T |
|
| Q |
222 |
taattgcattaattatcatgacgttaaagttttaaacttggtatataaatgtcattttgtttttgccggctacattttctatatatatgactcgtgcggc |
321 |
Q |
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||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||| |
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| T |
177947 |
taattgcattaattatcatgacgttaaagttctaagcttcgtatataaatgtcattttgtttttgcctgctacattttcgatatatatgacccgtgtggc |
177848 |
T |
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| Q |
322 |
agtacgggtggaaggt |
337 |
Q |
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|| ||||||||||||| |
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| T |
177847 |
agcacgggtggaaggt |
177832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 149344 - 149027
Alignment:
| Q |
21 |
agggctaaggtttcatgttgttttaagtgagatgcaatttaggcgggtcagaatttgaaggcatgttgatcggatagagagggaaattacacgggtagaa |
120 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
149344 |
agggctaaggtttcatgttgtcttaagagagatgcaatttaggcggatcataatttgaaggcatgttgatcggatagagagggaaattacacgggtagaa |
149245 |
T |
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| Q |
121 |
ttccactaacaaatgaggatgacctttgcaatgatagtgtacttcaaacgtagttttcaaagaatatttctgcaatgtataaacatgaattccttc-aaa |
219 |
Q |
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|||| |||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
149244 |
ttccgctaacaaatgcggatgacctttgcattgatagtgtacttcaaacgcaggtttcaaagaaattttctgcaatgtataaacatgaattccttcaaaa |
149145 |
T |
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| Q |
220 |
tataattgcattaattatcatgacgttaaagttttaaacttggtatataaatgtcattttgtttttgccggctacattttctatatatatgactcgtgcg |
319 |
Q |
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||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||| |
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| T |
149144 |
tataattgcattacttatcgtgacgttaaagttttaagtttggtatataaatgtcattttgttttcgcctgctacattttcgatatatatgacccgtgca |
149045 |
T |
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| Q |
320 |
gcagtacgggtggaaggt |
337 |
Q |
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||| || |||||||||| |
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| T |
149044 |
gcaaaacaggtggaaggt |
149027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 8942704 - 8942641
Alignment:
| Q |
23 |
ggctaaggtttcatgttgttttaagtgagatgcaatttag--gcgggtcagaatttgaaggcat |
84 |
Q |
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||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
8942704 |
ggctaagttttcatgttgttttaagagagatgcaatttaggcgcgggtcagaatttaaaggcat |
8942641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 34045292 - 34045358
Alignment:
| Q |
347 |
tttgcatcacttggaaccaaggcgtcacaactttaatttgatccaacttttgttattttatcggggatagttt |
419 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |
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| T |
34045292 |
tttgcatcacttggaaccaaggcgtcgcaac-----tttgatccaacttttg-tattttatcggggatagttt |
34045358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 11001360 - 11001319
Alignment:
| Q |
306 |
atatgactcgtgcggcagtacgggtggaaggtatagtttctt |
347 |
Q |
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||||||| |||||||||| ||||||||||||| ||||||||| |
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| T |
11001360 |
atatgacccgtgcggcagcacgggtggaaggtctagtttctt |
11001319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 3840678 - 3840634
Alignment:
| Q |
305 |
tatatgactcgtgcggcagtacgggtggaaggtatagtttctttt |
349 |
Q |
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| T |
3840678 |
tatatgactcgtgcggcagcacgggtggaaagtctagtttttttt |
3840634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 15432409 - 15432336
Alignment:
| Q |
270 |
atgtcattttgtttttgccggctacattttctatatatatgactcgtgcggcagtacgggtggaaggtatagtt |
343 |
Q |
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|||||| |||||||||||| |||||||||| || |||||||| |||||||| | |||||| ||| || ||||| |
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| T |
15432409 |
atgtcactttgtttttgccttctacattttcgatgtatatgacccgtgcggccgcacgggtagaaagtctagtt |
15432336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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