View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16625_high_6 (Length: 331)

Name: NF16625_high_6
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16625_high_6
NF16625_high_6
[»] chr8 (7 HSPs)
chr8 (14-316)||(7895130-7895435)
chr8 (34-110)||(44415934-44416010)
chr8 (33-114)||(40866295-40866376)
chr8 (37-111)||(24864608-24864682)
chr8 (37-111)||(38085946-38086020)
chr8 (33-115)||(42014301-42014383)
chr8 (36-109)||(9963285-9963358)
[»] chr7 (6 HSPs)
chr7 (36-113)||(37022194-37022271)
chr7 (33-113)||(46075148-46075228)
chr7 (37-115)||(25287956-25288034)
chr7 (33-111)||(30034301-30034379)
chr7 (37-115)||(34984430-34984508)
chr7 (33-109)||(46972135-46972211)
[»] chr1 (10 HSPs)
chr1 (35-116)||(23058051-23058132)
chr1 (35-109)||(23057679-23057753)
chr1 (35-109)||(23057864-23057938)
chr1 (35-109)||(23061980-23062054)
chr1 (37-113)||(37369512-37369588)
chr1 (33-112)||(30340907-30340986)
chr1 (33-115)||(30320741-30320823)
chr1 (50-104)||(23057567-23057621)
chr1 (50-104)||(23061868-23061922)
chr1 (36-109)||(43065996-43066074)
[»] chr4 (8 HSPs)
chr4 (33-119)||(50968242-50968328)
chr4 (33-111)||(6067669-6067747)
chr4 (33-111)||(31553694-31553772)
chr4 (36-110)||(4690134-4690208)
chr4 (37-111)||(33871041-33871115)
chr4 (37-110)||(34505290-34505363)
chr4 (37-110)||(52818059-52818132)
chr4 (37-111)||(6071145-6071218)
[»] chr2 (12 HSPs)
chr2 (33-118)||(34643000-34643085)
chr2 (33-111)||(8884447-8884525)
chr2 (36-111)||(36772397-36772472)
chr2 (36-111)||(36793511-36793586)
chr2 (36-111)||(37559326-37559401)
chr2 (37-117)||(39082462-39082542)
chr2 (36-115)||(3197563-3197642)
chr2 (37-112)||(24359790-24359865)
chr2 (37-111)||(4713110-4713184)
chr2 (37-111)||(36756170-36756244)
chr2 (37-111)||(42968150-42968224)
chr2 (116-144)||(44510936-44510964)
[»] chr6 (8 HSPs)
chr6 (33-111)||(3992803-3992881)
chr6 (33-111)||(7432416-7432494)
chr6 (33-111)||(7441933-7442011)
chr6 (33-111)||(7425621-7425699)
chr6 (36-109)||(7432982-7433055)
chr6 (33-111)||(7414581-7414659)
chr6 (33-111)||(7418530-7418608)
chr6 (33-111)||(7420505-7420583)
[»] chr5 (1 HSPs)
chr5 (36-111)||(2626071-2626146)
[»] chr3 (9 HSPs)
chr3 (37-111)||(11580203-11580277)
chr3 (37-111)||(29618312-29618386)
chr3 (24-109)||(35679472-35679557)
chr3 (37-111)||(35687869-35687943)
chr3 (37-125)||(41552086-41552174)
chr3 (37-111)||(52638656-52638730)
chr3 (37-109)||(1488013-1488085)
chr3 (37-109)||(2031252-2031324)
chr3 (37-111)||(35692217-35692291)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 316
Target Start/End: Original strand, 7895130 - 7895435
Alignment:
Q  14 cacagacaagaaaaaggtgaaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgt 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7895130 cacacacaagaaaaaggtgaaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccattt 7895229  T
Q  114 tgaaatgttttaattctcttagatatatattgaatttaggtaaaatcgaaatgttacacatgctggtgaagaacgttctttgtagtaatcaattattttg 213  Q
    || ||  |||||||||||||||||||||||||  ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7895230 tgtaaatttttaattctcttagatatatattgcttttagataaaatcgaaatgttacacatactggtgaagaacgttctttgtagtaatcaattattttg 7895329  T
Q  214 gagctatatgatgtgaatggaacatggtatttatcatcagcattaaaatacagtctagaatttcttgcttttaagagc---tattatttttctgcaggta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  7895330 gagctatatgatgtgaatggaacatggtatttatcatcagcattaaaatacagtctagaatttcttgcttttaagagctattattatttttctgcaggta 7895429  T
Q  311 cttttt 316  Q
    ||||||    
T  7895430 cttttt 7895435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 44416010 - 44415934
Alignment:
Q  34 aaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44416010 aaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccca 44415934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 40866295 - 40866376
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgtt 114  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40866295 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgtt 40866376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 24864682 - 24864608
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  24864682 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 24864608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 38086020 - 38085946
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  38086020 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 38085946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 42014383 - 42014301
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgttg 115  Q
    ||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||| ||||    
T  42014383 aaaatggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacacccccaagttg 42014301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 9963285 - 9963358
Alignment:
Q  36 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 109  Q
    |||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||    
T  9963285 atggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 9963358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 37022194 - 37022271
Alignment:
Q  36 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37022194 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgt 37022271  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 46075148 - 46075228
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgt 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  46075148 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgt 46075228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 25288034 - 25287956
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgttg 115  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  25288034 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgttg 25287956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 30034379 - 30034301
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  30034379 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 30034301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 34984430 - 34984508
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgttg 115  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  34984430 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccttgttg 34984508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 46972135 - 46972211
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 109  Q
    |||||||||| |||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||||    
T  46972135 aaaatggagacgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacgtcccc 46972211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 23058051 - 23058132
Alignment:
Q  35 aatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgttga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23058051 aatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccttgttga 23058132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 23057679 - 23057753
Alignment:
Q  35 aatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 109  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23057679 aatggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23057753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 23057864 - 23057938
Alignment:
Q  35 aatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23057864 aatggagatgcagggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacaccccc 23057938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 23061980 - 23062054
Alignment:
Q  35 aatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 109  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23061980 aatggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23062054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 37369512 - 37369588
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgt 113  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  37369512 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgt 37369588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 30340907 - 30340986
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatg 112  Q
    ||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30340907 aaaatggagatgcaggggatcaaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 30340986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 30320741 - 30320823
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgttg 115  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||    
T  30320741 aaaatggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatccccaagttg 30320823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 23057567 - 23057621
Alignment:
Q  50 tatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23057567 tatcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23057621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 23061868 - 23061922
Alignment:
Q  50 tatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23061868 tatcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23061922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 43066074 - 43065996
Alignment:
Q  36 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaa-----gcgagcgctctaccatgtgagctacatcccc 109  Q
    |||||||||||||||||||| ||||||||||||||||||| ||     |||||||||||||||| ||||||||||||||    
T  43066074 atggagatgcggggtatcgagccccgtacctctcgcatgctaagtgatgcgagcgctctaccatatgagctacatcccc 43065996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 50968242 - 50968328
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgttgaaat 119  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50968242 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgttgaaat 50968328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 6067747 - 6067669
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6067747 aaaatggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 6067669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 31553772 - 31553694
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  31553772 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 31553694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 4690134 - 4690208
Alignment:
Q  36 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccca 110  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  4690134 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccca 4690208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 33871041 - 33871115
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  33871041 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 33871115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 34505363 - 34505290
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccca 110  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34505363 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 34505290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 52818132 - 52818059
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccca 110  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||||||||||    
T  52818132 tggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatcccca 52818059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 6071218 - 6071145
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||| ||| ||||| | |||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  6071218 tggagatgcgggg-atcaaaccctgaacctcttgcatgcaaagcaagcgctctaccatttgagctacatccccat 6071145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 34643000 - 34643085
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgttgaaa 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  34643000 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatgttgaaa 34643085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 8884525 - 8884447
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  8884525 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 8884447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 36772397 - 36772472
Alignment:
Q  36 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36772397 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36772472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 36793511 - 36793586
Alignment:
Q  36 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36793511 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36793586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 37559326 - 37559401
Alignment:
Q  36 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37559326 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 37559401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 39082542 - 39082462
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgttgaa 117  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  39082542 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatgatgaa 39082462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 3197642 - 3197563
Alignment:
Q  36 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgttg 115  Q
    |||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  3197642 atggagatgcgggggatcaaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccaggttg 3197563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 24359865 - 24359790
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatg 112  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24359865 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatg 24359790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 4713110 - 4713184
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4713110 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 4713184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 36756170 - 36756244
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  36756170 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcactctaccatctgagctacatccccat 36756244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 42968224 - 42968150
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  42968224 tggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcaagcgctctaccatttgagctacatccccat 42968150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 44510936 - 44510964
Alignment:
Q  116 aaatgttttaattctcttagatatatatt 144  Q
    |||||||||||||||||||||||||||||    
T  44510936 aaatgttttaattctcttagatatatatt 44510964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 3992803 - 3992881
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3992803 aaaatggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 3992881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 7432416 - 7432494
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7432416 aaaatggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7432494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 7441933 - 7442011
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7441933 aaaatggagttgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7442011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 7425621 - 7425699
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  7425621 aaaatggagatgcggggtatcaatccccgtacctctcacatgctaagcgagcgctctaccatctgagctacatccccat 7425699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 7432982 - 7433055
Alignment:
Q  36 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 109  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  7432982 atggagatgcggggtatcgatccccgtacctcttgcatgctaagcgagcgctctaccatctgagctacatcccc 7433055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 7414581 - 7414659
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||| |||  |||||||| |||| |||||||| ||||| |||||||||||||||||| | ||||||||||||||    
T  7414581 aaaatggagttgcaaggtatcgatccccatacctctcacatgctaagcgagcgctctaccatctaagctacatccccat 7414659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 7418530 - 7418608
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    |||||||||||| |||||||| | |||||| |||||| ||||| |||||||| || |||||| ||||||||||||||||    
T  7418530 aaaatggagatgtggggtatcaatccccgtccctctcacatgctaagcgagcactataccatctgagctacatccccat 7418608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 7420505 - 7420583
Alignment:
Q  33 aaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    |||||||| || | ||||||||| || | |||||||||||||| |||||||| ||||||||| ||| | ||||| ||||    
T  7420505 aaaatggaaatacagggtatcgatccgcatacctctcgcatgctaagcgagcactctaccatctgatccacatctccat 7420583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 2626071 - 2626146
Alignment:
Q  36 atggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2626071 atggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 2626146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 11580277 - 11580203
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  11580277 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 11580203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 29618386 - 29618312
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29618386 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 29618312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 35679557 - 35679472
Alignment:
Q  24 aaaaaggtgaaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 109  Q
    |||||| | ||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  35679557 aaaaagatcaaattggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccc 35679472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 35687943 - 35687869
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35687943 tggagatgcggggtatcgatccccatacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35687869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 41552174 - 41552086
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccatgttgaaatgtttta 125  Q
    ||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||  ||||||||    
T  41552174 tggagctgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaaccccatgttgttatgtttta 41552086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 52638656 - 52638730
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    |||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  52638656 tggagatgcatggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatttgagctacatccccat 52638730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 1488085 - 1488013
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 109  Q
    ||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||    
T  1488085 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 1488013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 2031324 - 2031252
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 109  Q
    ||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||    
T  2031324 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 2031252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 35692291 - 35692217
Alignment:
Q  37 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 111  Q
    ||||||||| ||||||| | |||  |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35692291 tggagatgcagggtatcaatccctatacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35692217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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