View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16625_high_8 (Length: 267)
Name: NF16625_high_8
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16625_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 6461527 - 6461274
Alignment:
| Q |
1 |
gggtgagctaacatcaacaaatcacttcctgaacctttcgtctcccacttatactccatagtaaatgcttcattgaatgaagcatcaccagacacagggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6461527 |
gggtgagctaacatcaacaaatcacttcctgaacctttcgtctcccacttatactccatagtaaatgcttcattgaatgaagcatcaccagacacagggt |
6461428 |
T |
|
| Q |
101 |
aacaagtactaaccatgtcaagaacttcttcattttgtgaattggaattcgtcaacaaagcaattcgaattacaccagaaaaggcctcagatgtgatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6461427 |
aacaagtactaaccatgtcaagaacttcttcattttgtgaattggaattcgtcaacaaagcaattcgaattacaccagaaaaggcctcagatgtgatctc |
6461328 |
T |
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| Q |
201 |
agaaaggccatgactaaacttgattggcaaggaagagtataaaatccatgtttg |
254 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6461327 |
agaaaggccatgacttaacttgattggcaaggaagagtataaaatccatgtttg |
6461274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 6497145 - 6497398
Alignment:
| Q |
1 |
gggtgagctaacatcaacaaatcacttcctgaacctttcgtctcccacttatactccatagtaaatgcttcattgaatgaagcatcaccagacacagggt |
100 |
Q |
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|||||||||||||||||||||||||| | |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
6497145 |
gggtgagctaacatcaacaaatcactacttgaacctttcttctcccagttatactccatagtaaatgcttcattgaatgaagcgtcgccagacacagggt |
6497244 |
T |
|
| Q |
101 |
aacaagtactaaccatgtcaagaacttcttcattttgtgaattggaattcgtcaacaaagcaattcgaattacaccagaaaaggcctcagatgtgatctc |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6497245 |
aacaagtactaaacatgtcaagaacttcttcattttgtgaattggaattcgtcaacaaagcaattcgaattacaccagaaaaggcctcagaagtgatctt |
6497344 |
T |
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| Q |
201 |
agaaaggccatgactaaacttgattggcaaggaagagtataaaatccatgtttg |
254 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6497345 |
agaaaggccatgacttaacttgattggcaaggaagagtataaaatccatgtttg |
6497398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 6472755 - 6472505
Alignment:
| Q |
1 |
gggtgagctaacatcaacaaatcacttcctgaacctttcgtctcccacttatactccatagtaaatgcttcattgaatgaagcatcaccagacacagggt |
100 |
Q |
| |
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||||| |||||||||| ||||||| ||||||||||| |||| |||||||||| | | |||| | ||| |||| ||| ||||| |||| ||||| |
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| T |
6472755 |
gggtgtgctaacatcagtaaatcac---ctgaacctttcttctcaaacttatactcaacactaaacggttctttgagcatagcttcacctgacaaagggt |
6472659 |
T |
|
| Q |
101 |
aacaagtactaaccatgtcaagaacttcttcattttgtgaattggaattcgtcaacaaagcaattcgaattacaccagaaaaggcctcagatgtgatctc |
200 |
Q |
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|||||| ||| | | ||||| || ||||| |||| ||||||||||| || ||||||||| || ||||| | || |||||||||||||| |||||||| |
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| T |
6472658 |
aacaagaactgtacttatcaaggacatcttcgttttttgaattggaatccggcaacaaagctatccgaatcatgccggaaaaggcctcagaagtgatctc |
6472559 |
T |
|
| Q |
201 |
agaaaggccatgactaaacttgattggcaaggaagagtataaaatccatgtttg |
254 |
Q |
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|||||| ||||||| | |||||| ||| |||||| ||||| ||||||||||| |
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| T |
6472558 |
agaaagttcatgacttagcttgatcggcgaggaagcgtataggatccatgtttg |
6472505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 13035337 - 13035203
Alignment:
| Q |
116 |
tgtcaagaacttcttcattttgtgaattggaattcgtcaacaaagcaattcgaattacaccagaaaaggcctcagatgtgatctcagaaaggccatgact |
215 |
Q |
| |
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||||||||| || || |||| ||||||| ||| || || |||||||| ||||||| | |||||||||||||| |||||||||||||| ||||||| |
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| T |
13035337 |
tgtcaagaatatcctcgttttttgaattgaaatccggaaataaagcaatccgaattatgctggaaaaggcctcagaagtgatctcagaaagttcatgact |
13035238 |
T |
|
| Q |
216 |
aaacttgattggcaaggaagagtataaaatccatg |
250 |
Q |
| |
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||||||||||||||||||| ||||| ||||||| |
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| T |
13035237 |
taacttgattggcaaggaagcgtataggatccatg |
13035203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 6515673 - 6515563
Alignment:
| Q |
144 |
ggaattcgtcaacaaagcaattcgaattacaccagaaaaggcctcagatgtgatctcagaaaggccatgactaaacttgattggcaaggaagagtataaa |
243 |
Q |
| |
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|||||| | ||||||||| || ||||||| |||||||||||||| ||| || |||| | || ||||||| ||||||||||| |||||| ||||||| |
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| T |
6515673 |
ggaatttggcaacaaagcgatccgaattataccagaaaaggccttagaagtaatcttaaaagtttcatgactcaacttgattggtgaggaagtgtataaa |
6515574 |
T |
|
| Q |
244 |
atccatgtttg |
254 |
Q |
| |
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| ||||||||| |
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| T |
6515573 |
acccatgtttg |
6515563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 254
Target Start/End: Complemental strand, 9664920 - 9664762
Alignment:
| Q |
96 |
agggtaacaagtactaaccatgtcaagaacttcttcattttgtgaattggaattcgtcaacaaagcaattcgaattacaccagaaaaggcctcagatgtg |
195 |
Q |
| |
|
|||||||||||| |||| | |||||||||| ||||||||| ||||| |||| || |||||||||||| | |||||||||| |||| || ||||| ||| |
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| T |
9664920 |
agggtaacaagtgctaaacttgtcaagaacagcttcattttttgaatcagaatccggcaacaaagcaatcctaattacaccacaaaatgcttcagaagtg |
9664821 |
T |
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| Q |
196 |
atctcagaaaggccatgactaaacttgattggcaaggaagagtataaaatccatgtttg |
254 |
Q |
| |
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|||||||||| |||||| | ||| |||| || | |||| || |||||||||||||| |
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| T |
9664820 |
atctcagaaacaccatgattcaacatgataggagaagaagcatagaaaatccatgtttg |
9664762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 254
Target Start/End: Complemental strand, 13535944 - 13535786
Alignment:
| Q |
96 |
agggtaacaagtactaaccatgtcaagaacttcttcattttgtgaattggaattcgtcaacaaagcaattcgaattacaccagaaaaggcctcagatgtg |
195 |
Q |
| |
|
|||||||||||| |||| | |||||||||| ||||||||| ||||| |||| || |||||||||||| | |||||||||| |||| || ||||| ||| |
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| T |
13535944 |
agggtaacaagtgctaaacttgtcaagaacagcttcattttttgaatcagaatccggcaacaaagcaatcctaattacaccacaaaatgcttcagaagtg |
13535845 |
T |
|
| Q |
196 |
atctcagaaaggccatgactaaacttgattggcaaggaagagtataaaatccatgtttg |
254 |
Q |
| |
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|||||||||| |||||| | ||| |||| || | |||| || |||||||||||||| |
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|
| T |
13535844 |
atctcagaaacaccatgattcaacatgataggagaagaagcatagaaaatccatgtttg |
13535786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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