View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16625_high_9 (Length: 249)
Name: NF16625_high_9
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16625_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 9711797 - 9711634
Alignment:
| Q |
70 |
tagacattgatcattacttaagagtatgacactagttaaaggcctcttattctcctatttccatgccattattgactaactatttctccaaaaaagagag |
169 |
Q |
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| T |
9711797 |
tagacattgatcattacttaagagtatgacactagttaaaggcctcttattctcctatttccatgccattattgactaactacttctccaaaaaagagag |
9711698 |
T |
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| Q |
170 |
gacaga-aaaacacatgaacctatgatttttgcaataagaaataataaccatgcatgcatacat |
232 |
Q |
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| T |
9711697 |
gacagaaaaaacacatgaacctatgatttttgcaataagaaataataaccatgcatgcatacat |
9711634 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 25706159 - 25706071
Alignment:
| Q |
19 |
attgaatctgagagtaacacaaggaatgaatcaagacaagttaattattattagacattgatcattacttaagagtatgacactagttaaa |
109 |
Q |
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| T |
25706159 |
attgaatctgagagtaaaacaagaaatgagtcaagagaagttg-ttattaa-atatattgatcattacttaagagtatgacactagttaaa |
25706071 |
T |
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