View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16625_low_14 (Length: 243)

Name: NF16625_low_14
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16625_low_14
NF16625_low_14
[»] chr3 (2 HSPs)
chr3 (17-243)||(35682340-35682566)
chr3 (130-209)||(44560125-44560204)
[»] chr2 (2 HSPs)
chr2 (130-217)||(42139326-42139413)
chr2 (165-217)||(38808984-38809036)
[»] chr1 (1 HSPs)
chr1 (93-217)||(7583338-7583463)
[»] chr5 (2 HSPs)
chr5 (135-207)||(28363380-28363452)
chr5 (135-209)||(22028654-22028728)
[»] chr7 (1 HSPs)
chr7 (93-216)||(12473544-12473667)
[»] chr4 (1 HSPs)
chr4 (167-217)||(31235533-31235583)
[»] chr8 (1 HSPs)
chr8 (181-217)||(38529829-38529865)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 35682340 - 35682566
Alignment:
Q  17 aaaattaactacactattttcgaaactgctaagcattttccaaaacagatcatttgtaaaattggttatgaatctatttggcaagacacatttttgagct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35682340 aaaattaactacactattttcgaaactgctaagcattttccaaaacagatcatttgtaaaattggttatgaatctatttggcaagacacatttttgagct 35682439  T
Q  117 tatatttcatagtttatatcttatatgctcatatgagtaaaaaggatatgtttggcaaccgtcattttctcacaagcttatagtttatttttattagctt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35682440 tatatttcatagtttatatcttatatgctcatatgagtaaaaaggatatgtttggcaaccgtcattttctcacaagcttatagtttatttttattagctt 35682539  T
Q  217 aacctaattcaagtagcttatagctta 243  Q
    |||||||||||||||||||||||||||    
T  35682540 aacctaattcaagtagcttatagctta 35682566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 44560125 - 44560204
Alignment:
Q  130 ttatatcttatatgctcatatgagtaaaaaggatatgtttggcaaccgtcattttctcacaagcttatagtttattttta 209  Q
    ||||| |||||| | |||||||| |||||| || |||||||| ||||||||||||||||| || ||||| ||||||||||    
T  44560125 ttataacttataagttcatatgactaaaaaagacatgtttggtaaccgtcattttctcacgagtttataatttattttta 44560204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 42139326 - 42139413
Alignment:
Q  130 ttatatcttatatgctcatatgagtaaaaaggatatgtttggcaaccgtcattttctcacaagcttatagtttatttttattagctta 217  Q
    |||| ||||||| |||||| ||| ||||||  | |||||||| ||  |||| |||||||||||||||||| |||||||||||||||||    
T  42139326 ttatgtcttataagctcatttgactaaaaaatacatgtttggtaattgtcactttctcacaagcttatagcttatttttattagctta 42139413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 38809036 - 38808984
Alignment:
Q  165 tgtttggcaaccgtcattttctcacaagcttatagtttatttttattagctta 217  Q
    ||||||| ||| |||| |||||||||||||||||| ||| ||||| |||||||    
T  38809036 tgtttggtaactgtcactttctcacaagcttatagcttaattttactagctta 38808984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 217
Target Start/End: Original strand, 7583338 - 7583463
Alignment:
Q  93 tttggcaagacacatttttgagcttatatttcatagtttat-atcttatatgctcatatgagtaaaaaggatatgtttggcaaccgtcattttctcacaa 191  Q
    ||||| ||||||||| ||||||||| |  || ||| ||||| | |||||| | |||||||| ||||||  | || ||| | ||| ||||||||||||| |    
T  7583338 tttggtaagacacatatttgagcttgtggtttatattttattaacttataagttcatatgactaaaaaaaacatatttcgtaactgtcattttctcacga 7583437  T
Q  192 gcttatagtttatttttattagctta 217  Q
    ||||||||||||||||||| ||||||    
T  7583438 gcttatagtttatttttatgagctta 7583463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 28363380 - 28363452
Alignment:
Q  135 tcttatatgctcatatgagtaaaaaggatatgtttggcaaccgtcattttctcacaagcttatagtttatttt 207  Q
    ||||||| |||||| ||| || ||| ||  |||||||||||||||| |||||||||||||||||| |||||||    
T  28363380 tcttataagctcatttgactataaaagacttgtttggcaaccgtcactttctcacaagcttatagcttatttt 28363452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 22028654 - 22028728
Alignment:
Q  135 tcttatatgctcatatgagtaaaaaggatatgtttggcaaccgtcattttctcacaagcttatagtttattttta 209  Q
    ||||||| |||||| ||| |||||| ||   |||||| |||||||| |||||||||||||||||| |||||||||    
T  22028654 tcttataagctcatttgactaaaaaagacccgtttggtaaccgtcactttctcacaagcttatagcttattttta 22028728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 216
Target Start/End: Complemental strand, 12473667 - 12473544
Alignment:
Q  93 tttggcaagacacatttttgagcttatatttcatagtttatatcttatatgctcatatgagtaaaaaggatatgtttggcaaccgtcattttctcacaag 192  Q
    ||||||||  ||||| ||||||||||||  | |||| ||||  |||||| |||||| ||| |||||| ||   |||||| |||||| |||||||||  ||    
T  12473667 tttggcaatccacatatttgagcttataacttatagcttatggcttataagctcatttgactaaaaaagacccgtttggtaaccgtaattttctcatgag 12473568  T
Q  193 cttatagtttatttttattagctt 216  Q
    ||||||| ||||||||| ||||||    
T  12473567 cttatagcttatttttactagctt 12473544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 31235583 - 31235533
Alignment:
Q  167 tttggcaaccgtcattttctcacaagcttatagtttatttttattagctta 217  Q
    ||||| |||||||| |||||||| ||||||||| |||| ||||||||||||    
T  31235583 tttggtaaccgtcactttctcacgagcttatagattatctttattagctta 31235533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 38529865 - 38529829
Alignment:
Q  181 ttttctcacaagcttatagtttatttttattagctta 217  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  38529865 ttttctcacaagcttatagattatttttactagctta 38529829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University