View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16625_low_16 (Length: 237)
Name: NF16625_low_16
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16625_low_16 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 14828075 - 14827839
Alignment:
| Q |
1 |
ttgaatctagatattatttcaaatataaaaagttctttagttttcaattaaaatgtgttgttgaaacaaccacagcctagtagagtagaaatagaaacac |
100 |
Q |
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| T |
14828075 |
ttgaatctagatattatttcaaatataaaaagttctttagttttcaattaaaatgtgttgttgaaacaaccacagcctagtagagtagaaatagaaaaac |
14827976 |
T |
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| Q |
101 |
caacgatgttggaggtcaaaatttccgccaaggaatagttgattaagcttttccacacttatgatcctgaatggatcacatctcaagataatcaaaaact |
200 |
Q |
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| T |
14827975 |
caacaatgttggaggtcaaaattgcagccaaggaatagttgattaagattttctgcacttatgatcctgaatgggtcacatctcaagataatcaaaaact |
14827876 |
T |
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| Q |
201 |
tgttcttcaacaagaaaactatgaagaagtgttccct |
237 |
Q |
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| T |
14827875 |
tattcttcaacaagaaaactatgaagaagtgttccct |
14827839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 14827185 - 14827419
Alignment:
| Q |
1 |
ttgaatctagatattatttcaaatataaaaagttctttagttttcaattaaaatgtgttgttgaaacaaccacagcctagtagagtagaaatagaaacac |
100 |
Q |
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||||||||||||||| ||||| | ||||| |||||||||||| ||| | || || | | |||||||| ||| ||||||||| ||| ||||| || |
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| T |
14827185 |
ttgaatctagatattggttcaagttcaaaaacttctttagttttgaatgataacgtttcttcgaaacaactacaatgcagtagagtataaacagaaatac |
14827284 |
T |
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| Q |
101 |
caacgatgttggaggtcaaaatttccgccaaggaatagttgattaagcttttccacacttatgatcctgaatggatcacatctcaagataatcaaaaact |
200 |
Q |
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| T |
14827285 |
caatgatgttggaggtcaa--ttactgccaaggaagagttgcttatgtttttccgcaccaatgagcctttatgggtcatttatcaagttaatcaaaatct |
14827382 |
T |
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| Q |
201 |
tgttcttcaacaagaaaactatgaagaagtgttccct |
237 |
Q |
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| T |
14827383 |
tattcttcaaccagaaaactatgaagatgtcttccct |
14827419 |
T |
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