View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16625_low_18 (Length: 233)
Name: NF16625_low_18
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16625_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 2372785 - 2373004
Alignment:
| Q |
6 |
atcatcattaataatatgattcaatcatagataataatggcaagatatgcacactagaatcttaccttaatgaaaccaagccttaatgtcatatagtcca |
105 |
Q |
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| T |
2372785 |
atcatcattaataatatgattcaataatagataatattggcaagatatgcacactaaaatcttaccttaatgaaaccaagccttaatgccatatagtcca |
2372884 |
T |
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| Q |
106 |
actttgtcagagatccataaaattgcttgaaaaattatttctgaaataaaaatgcaaaattaggcacatacaacaaactactttgtaaaaccagtaaaat |
205 |
Q |
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| T |
2372885 |
actttgtcatagatccataaaattgcttgaaaatttatttctgaaataaaaatgcaaaattaggcacatacaacaaactactttgtaaaaccagtaaaat |
2372984 |
T |
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| Q |
206 |
ataattaactacatataatt |
225 |
Q |
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|||||||||||||||||||| |
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| T |
2372985 |
ataattaactacatataatt |
2373004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 2755525 - 2755662
Alignment:
| Q |
12 |
attaataatatgattcaatcatagataataatggcaagatatgcacactagaatcttaccttaatgaaaccaagccttaatgtcatatagtccaactttg |
111 |
Q |
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| T |
2755525 |
attaataatatgattcaatcatatataataatggcaagatatgcacactaaaatcttaccttaatgaaaccaagccttaatgtcacatagtccaactttg |
2755624 |
T |
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| Q |
112 |
tcagagatccataaaattgcttgaaaaattatttctga |
149 |
Q |
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| T |
2755625 |
tcacagatccataaaattgcttgaaaaatgatttctga |
2755662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 2747528 - 2747631
Alignment:
| Q |
64 |
atcttaccttaatgaaaccaagccttaatgtcatatagtccaactttgtcagagatccataaaattgcttgaaaaattatttctgaaataaaaatgcaaa |
163 |
Q |
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|||||||| ||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||| |
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| T |
2747528 |
atcttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatataaatgaaaa |
2747627 |
T |
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| Q |
164 |
atta |
167 |
Q |
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|||| |
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| T |
2747628 |
atta |
2747631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 55322134 - 55322055
Alignment:
| Q |
60 |
tagaatcttaccttaatgaaaccaagccttaatgtcatatagtccaactttgtcagagatccataaaattgcttgaaaaa |
139 |
Q |
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| T |
55322134 |
tagaaccttaccgtaatgaaaccaagtcttaatgtgacataatctgattttgtcacagagccataaaattgcttgaaaaa |
55322055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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