View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16625_low_2 (Length: 506)

Name: NF16625_low_2
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16625_low_2
NF16625_low_2
[»] chr5 (26 HSPs)
chr5 (16-353)||(28508672-28509011)
chr5 (352-496)||(12399079-12399223)
chr5 (352-496)||(34208538-34208682)
chr5 (352-496)||(29874954-29875098)
chr5 (352-496)||(23090298-23090442)
chr5 (352-496)||(4145694-4145838)
chr5 (352-496)||(4695295-4695439)
chr5 (351-491)||(3077596-3077736)
chr5 (367-486)||(42757953-42758072)
chr5 (129-232)||(28508954-28509057)
chr5 (417-496)||(22646042-22646121)
chr5 (367-467)||(12096365-12096466)
chr5 (352-467)||(41610579-41610694)
chr5 (352-421)||(42793040-42793109)
chr5 (355-419)||(4434783-4434847)
chr5 (373-496)||(22528023-22528149)
chr5 (349-384)||(23090543-23090578)
chr5 (350-385)||(29875198-29875233)
chr5 (350-385)||(42793562-42793597)
chr5 (352-385)||(12398946-12398979)
chr5 (351-384)||(41610372-41610405)
chr5 (352-385)||(42757805-42757838)
chr5 (349-421)||(8718022-8718094)
chr5 (351-463)||(19574685-19574795)
chr5 (349-385)||(34208782-34208818)
chr5 (367-401)||(594328-594362)
[»] chr7 (37 HSPs)
chr7 (352-496)||(17904163-17904307)
chr7 (351-496)||(29427297-29427442)
chr7 (352-496)||(26770179-26770323)
chr7 (352-496)||(37179465-37179608)
chr7 (352-496)||(46467468-46467612)
chr7 (352-496)||(6387825-6387969)
chr7 (352-496)||(6389732-6389876)
chr7 (360-496)||(9876271-9876407)
chr7 (352-496)||(29890959-29891103)
chr7 (350-496)||(41921987-41922133)
chr7 (349-496)||(4405106-4405253)
chr7 (356-475)||(31503091-31503210)
chr7 (351-461)||(19523863-19523975)
chr7 (355-451)||(9332364-9332460)
chr7 (367-494)||(33974506-33974636)
chr7 (352-496)||(12252069-12252216)
chr7 (372-496)||(9215595-9215722)
chr7 (351-467)||(43701550-43701666)
chr7 (352-467)||(29722955-29723070)
chr7 (349-496)||(31858225-31858374)
chr7 (367-496)||(46689878-46690011)
chr7 (352-467)||(33379130-33379244)
chr7 (351-497)||(33915716-33915863)
chr7 (367-429)||(49011058-49011120)
chr7 (410-496)||(48049057-48049146)
chr7 (372-496)||(5514797-5514923)
chr7 (349-384)||(46467332-46467367)
chr7 (351-385)||(4405353-4405387)
chr7 (351-385)||(29890825-29890859)
chr7 (352-385)||(17904407-17904440)
chr7 (352-385)||(29723381-29723414)
chr7 (352-385)||(37179331-37179364)
chr7 (349-384)||(26770424-26770459)
chr7 (352-385)||(6387692-6387725)
chr7 (442-496)||(22753201-22753257)
chr7 (349-385)||(9332565-9332601)
chr7 (349-385)||(31502650-31502685)
[»] chr3 (35 HSPs)
chr3 (349-496)||(29371671-29371818)
chr3 (351-495)||(1352130-1352274)
chr3 (352-496)||(18996967-18997111)
chr3 (352-496)||(18999506-18999650)
chr3 (352-496)||(32677610-32677754)
chr3 (352-496)||(39528749-39528893)
chr3 (352-496)||(41349504-41349648)
chr3 (339-496)||(55365895-55366052)
chr3 (352-496)||(28228436-28228580)
chr3 (352-496)||(39807112-39807256)
chr3 (355-496)||(21974152-21974293)
chr3 (355-496)||(21996583-21996724)
chr3 (351-496)||(36737967-36738112)
chr3 (358-496)||(38855323-38855461)
chr3 (355-496)||(22157261-22157402)
chr3 (359-487)||(29014832-29014960)
chr3 (367-496)||(39518422-39518551)
chr3 (352-496)||(32839949-32840092)
chr3 (367-496)||(49040977-49041107)
chr3 (352-421)||(49319347-49319416)
chr3 (349-385)||(39518651-39518687)
chr3 (350-385)||(41349369-41349404)
chr3 (351-385)||(29014689-29014723)
chr3 (351-385)||(36737833-36737867)
chr3 (351-385)||(38855561-38855595)
chr3 (352-385)||(1351996-1352029)
chr3 (352-385)||(18997211-18997244)
chr3 (352-385)||(18999750-18999783)
chr3 (352-385)||(39528993-39529026)
chr3 (352-384)||(46878980-46879012)
chr3 (377-464)||(837370-837455)
chr3 (352-385)||(29371538-29371571)
chr3 (352-385)||(32677477-32677510)
chr3 (352-385)||(39806979-39807012)
chr3 (358-458)||(34667662-34667762)
[»] chr8 (25 HSPs)
chr8 (351-496)||(33837862-33838007)
chr8 (352-496)||(2508929-2509073)
chr8 (352-496)||(28378947-28379091)
chr8 (352-496)||(45334409-45334553)
chr8 (350-496)||(25106209-25106355)
chr8 (357-482)||(13469652-13469777)
chr8 (351-496)||(9739984-9740129)
chr8 (352-496)||(38495605-38495749)
chr8 (351-475)||(27793345-27793469)
chr8 (396-496)||(2626371-2626472)
chr8 (350-496)||(32183614-32183761)
chr8 (351-421)||(27024432-27024502)
chr8 (351-419)||(25978969-25979037)
chr8 (351-467)||(8235161-8235276)
chr8 (387-467)||(3203413-3203492)
chr8 (367-414)||(2626667-2626714)
chr8 (350-385)||(27027655-27027690)
chr8 (352-385)||(25106455-25106488)
chr8 (352-385)||(28379191-28379224)
chr8 (352-385)||(33837729-33837762)
chr8 (352-385)||(45334276-45334309)
chr8 (352-384)||(9740231-9740263)
chr8 (351-384)||(13469507-13469540)
chr8 (352-385)||(38495472-38495505)
chr8 (349-385)||(25978715-25978751)
[»] chr6 (16 HSPs)
chr6 (351-496)||(27312249-27312394)
chr6 (351-496)||(32274433-32274578)
chr6 (354-496)||(8504835-8504977)
chr6 (359-496)||(5003889-5004026)
chr6 (351-496)||(29452675-29452821)
chr6 (349-454)||(12174697-12174802)
chr6 (352-496)||(31171123-31171267)
chr6 (352-467)||(18741947-18742062)
chr6 (413-496)||(2543142-2543225)
chr6 (351-496)||(7156370-7156503)
chr6 (352-400)||(29302500-29302548)
chr6 (351-385)||(27312113-27312147)
chr6 (352-385)||(8504733-8504766)
chr6 (351-385)||(2543325-2543359)
chr6 (352-385)||(32274678-32274711)
chr6 (352-384)||(18742191-18742223)
[»] chr1 (29 HSPs)
chr1 (351-496)||(47669118-47669263)
chr1 (352-495)||(46220259-46220402)
chr1 (349-490)||(4817266-4817407)
chr1 (352-496)||(10737834-10737978)
chr1 (352-496)||(9831503-9831647)
chr1 (352-496)||(18126851-18126994)
chr1 (352-496)||(3384728-3384870)
chr1 (351-488)||(4055483-4055620)
chr1 (351-496)||(48564817-48564961)
chr1 (367-491)||(8889457-8889581)
chr1 (353-496)||(7414208-7414351)
chr1 (352-454)||(1236205-1236307)
chr1 (372-496)||(39241172-39241296)
chr1 (351-431)||(1749521-1749601)
chr1 (352-421)||(33020206-33020275)
chr1 (375-467)||(26842462-26842552)
chr1 (351-467)||(33846820-33846936)
chr1 (351-467)||(33947042-33947158)
chr1 (409-480)||(37875849-37875920)
chr1 (351-385)||(10737700-10737734)
chr1 (351-385)||(46220503-46220537)
chr1 (352-385)||(47669363-47669396)
chr1 (353-385)||(1236071-1236103)
chr1 (349-385)||(33023428-33023464)
chr1 (351-383)||(48565063-48565095)
chr1 (367-467)||(49112439-49112535)
chr1 (355-385)||(9831747-9831777)
chr1 (351-385)||(37875726-37875760)
chr1 (352-385)||(8889687-8889720)
[»] chr2 (15 HSPs)
chr2 (354-496)||(15233757-15233899)
chr2 (350-496)||(43040982-43041128)
chr2 (351-496)||(35793040-35793184)
chr2 (351-496)||(41252414-41252559)
chr2 (350-490)||(31296081-31296221)
chr2 (352-495)||(44104683-44104833)
chr2 (352-496)||(41642891-41643038)
chr2 (367-496)||(31903513-31903641)
chr2 (352-421)||(10118660-10118729)
chr2 (367-489)||(21727684-21727809)
chr2 (350-385)||(10112337-10112372)
chr2 (351-421)||(36963130-36963200)
chr2 (352-385)||(15233999-15234032)
chr2 (352-385)||(43040849-43040882)
chr2 (352-384)||(44104546-44104578)
[»] chr4 (20 HSPs)
chr4 (350-496)||(45590740-45590886)
chr4 (350-496)||(8955909-8956055)
chr4 (362-496)||(34334342-34334476)
chr4 (351-496)||(33288538-33288683)
chr4 (358-496)||(49162108-49162245)
chr4 (352-496)||(18835705-18835851)
chr4 (351-444)||(30469353-30469446)
chr4 (355-451)||(39481906-39482002)
chr4 (367-496)||(50774191-50774325)
chr4 (351-421)||(19256185-19256255)
chr4 (350-467)||(26025685-26025802)
chr4 (418-496)||(36971115-36971192)
chr4 (351-402)||(36016278-36016329)
chr4 (367-421)||(36968353-36968407)
chr4 (367-496)||(33109031-33109163)
chr4 (352-386)||(19257103-19257137)
chr4 (350-385)||(49162332-49162367)
chr4 (355-385)||(8955779-8955809)
chr4 (352-385)||(45590986-45591019)
chr4 (353-385)||(39482106-39482138)
[»] scaffold0103 (1 HSPs)
scaffold0103 (350-496)||(44617-44764)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 28508672 - 28509011
Alignment:
Q  16 caccaatgatttaaatcatttaatgaatgcaaattaagccatactatta---tctaagaattgcaatttgattatttgaataattttttgatgtcaacaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   | | |||||||||||||||||||||||||||||| ||| |||||||||    
T  28508672 caccaatgatttaaatcatttaatgaatgcaaattaagccatactattagtatatcagaattgcaatttgattatttgaataatttcttggtgtcaacaa 28508771  T
Q  113 tcctctttaaattcatatttactatacactaatgccaatggcaagttggttgttaagtttgtgtttagtttatagttatagctaaggaattcggattgcg 212  Q
    || |||||||||||||||||||   |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28508772 tc-tctttaaattcatatttacctgacactaatgccaaccgcaagttggttgttaagtttgtgtttagtttatagttatagctaaggaattcggattgcg 28508870  T
Q  213 tgcaatttgcatccttaatctccagcattcactcaatccgtacatttgtgattgaatttgaaagattcaaatttcaaatttcaatttaccaaacactaat 312  Q
    |||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28508871 tgcaatctgcatccttaatccccaacattcactcaatccatacatttgtgattgaatttgaaagattcatatttcaaatttcaatttaccaaacactaat 28508970  T
Q  313 accaatgccaaattggttgttaagtttgtgtttaggttata 353  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  28508971 accaatgccaagttggttgttaagtttgtgtttagattata 28509011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 12399223 - 12399079
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  12399223 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 12399124  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12399123 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 12399079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 34208538 - 34208682
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  34208538 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 34208637  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34208638 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 34208682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 29874954 - 29875098
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  29874954 tactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 29875053  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29875054 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 29875098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 23090298 - 23090442
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  23090298 tactccctccattccttttcttttgatgttttagaacttcaactgtattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttacc 23090397  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23090398 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 23090442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 4145694 - 4145838
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  4145694 tactcgctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttcttaagtttacc 4145793  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4145794 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 4145838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 4695439 - 4695295
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  4695439 tactcccttcattccttttcttttgattttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 4695340  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  4695339 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 4695295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 351 - 491
Target Start/End: Original strand, 3077596 - 3077736
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||||||||     
T  3077596 atactccctccattcattttcttttgatgttttagaatttcaactatattttaaaacttttgatgttttagtgaatttgttattgttttctcaagtttat 3077695  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgac 491  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3077696 ccttgttggaaaacacaataaactattaaagtagttgtgac 3077736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 367 - 486
Target Start/End: Complemental strand, 42758072 - 42757953
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 466  Q
    |||| |||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  42758072 ttttttttttatgttttagaacttcaactatttttcaaaacttttgatgttttagtgaatttattattgttttctcaagtttatccttgttggaaaacac 42757973  T
Q  467 aataaactattaaagtagtt 486  Q
     |||||||||||||||||||    
T  42757972 gataaactattaaagtagtt 42757953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 28508954 - 28509057
Alignment:
Q  129 atttactatacactaatgccaatggcaagttggttgttaagtttgtgtttagtttatagttatagctaaggaattcggattgcgtgcaatttgcatcctt 228  Q
    |||||| | |||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| ||| ||||||     
T  28508954 atttaccaaacactaataccaatgccaagttggttgttaagtttgtgtttagattatagttatagttaaggaatttggattgcgtgcagtttacatcctc 28509053  T
Q  229 aatc 232  Q
    ||||    
T  28509054 aatc 28509057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 22646121 - 22646042
Alignment:
Q  417 tttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||    
T  22646121 tttagtgaatttattattgttttctcaagtttaaccttgttgaaaaacaccataaactattaaagtagttgtgacttttg 22646042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 367 - 467
Target Start/End: Complemental strand, 12096466 - 12096365
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagta-aatttattattgttttctcaagtttacccttgttggaaaaca 465  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || | |||| |||| ||||||||||| ||| ||||||| ||||||    
T  12096466 ttttcttttgatgttttaggacttcaactatattccaaaacatttgatgttttaatatattttaatattcttttctcaagtgtactcttgttgaaaaaca 12096367  T
Q  466 ca 467  Q
    ||    
T  12096366 ca 12096365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 352 - 467
Target Start/End: Complemental strand, 41610694 - 41610579
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || |||| || | |||   ||| ||||||    
T  41610694 tactctctccatttcttttcttttgatgttttagaacttaaactttattccaaaacttttgatgttttagaaattttaatactttttatccaattttacc 41610595  T
Q  452 cttgttggaaaacaca 467  Q
    ||||||  ||||||||    
T  41610594 cttgttaaaaaacaca 41610579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 42793040 - 42793109
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 421  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  42793040 tactcactccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 42793109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 4434783 - 4434847
Alignment:
Q  355 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 419  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||| ||| |  |||||||||||    
T  4434783 tccctccatttcttttcttttgatgttttaggacttcaactttatttcaagatatttgatgtttt 4434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 496
Target Start/End: Original strand, 22528023 - 22528149
Alignment:
Q  373 tttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca--at- 469  Q
    |||||| |||||| ||||||| |||| |||||||  ||||||||||||||| ||||| || | || |  ||| |||||| |||||| ||||||||  ||     
T  22528023 tttgatattttaggacttcaattatactccaaaatatttgatgttttagtacatttaataattttattccaaatttacctttgttgaaaaacacaccata 22528122  T
Q  470 aaactattaaagtagttgtgacctttg 496  Q
    |||||||||||  ||||||||||||||    
T  22528123 aaactattaaaagagttgtgacctttg 22528149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 23090578 - 23090543
Alignment:
Q  349 ttatactccctccattccttttcttttgatgtttta 384  Q
    ||||||||||||||||||||||||||||||||||||    
T  23090578 ttatactccctccattccttttcttttgatgtttta 23090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 29875233 - 29875198
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||||    
T  29875233 tatactccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 42793597 - 42793562
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||||    
T  42793597 tatactccctccattccttttcttttgatgttttag 42793562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 12398946 - 12398979
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 41610372 - 41610405
Alignment:
Q  351 atactccctccattccttttcttttgatgtttta 384  Q
    ||||||||||||||||||||||||||||||||||    
T  41610372 atactccctccattccttttcttttgatgtttta 41610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 42757805 - 42757838
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 8718022 - 8718094
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 421  Q
    ||||| |||||||||| ||||||||||||| |||||  | ||||||| |||| |||||  |||||||||||||    
T  8718022 ttataatccctccatttcttttcttttgatattttaagatttcaactttatttcaaaatatttgatgttttag 8718094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 463
Target Start/End: Original strand, 19574685 - 19574795
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    ||||||||||||||  || |||||||||||||||| ||||||| || ||| |||||  ||| |||||||| || ||||| |||| ||||| |||| | ||    
T  19574685 atactccctccattt-ttgtcttttgatgttttaggacttcaattaaatttcaaaatatttaatgttttaatatatttaatatt-ttttcccaaggtcac 19574782  T
Q  451 ccttgttggaaaa 463  Q
    |||||||| ||||    
T  19574783 ccttgttgaaaaa 19574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 34208818 - 34208782
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34208818 ttatactccctccattcctttttttttgatgttttag 34208782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 401
Target Start/End: Complemental strand, 594362 - 594328
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattc 401  Q
    |||||||||||||||||| ||||||||||||||||    
T  594362 ttttcttttgatgttttaaaacttcaactatattc 594328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 17904163 - 17904307
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 17904262  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17904263 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 17904307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 29427442 - 29427297
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29427442 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 29427343  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  29427342 ccttgttggaaaacacaataaactattaaagtagttgtgatctttg 29427297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 26770179 - 26770323
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgttttagaacttcaactaaattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 26770278  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26770279 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 26770323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 37179608 - 37179465
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  37179608 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct-aagtttacc 37179510  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37179509 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 37179465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 46467612 - 46467468
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 46467513  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
     ||||||||||||||||||||||||||||||||||| ||||||||    
T  46467512 tttgttggaaaacacaataaactattaaagtagttgcgacctttg 46467468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 6387969 - 6387825
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  6387969 tactccctccattccttttcttttgatgttttagaactgcaactatattccaaaacttttgatgttttagtgaatttgttattgttttatcaagtttacc 6387870  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  6387869 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 6387825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 6389732 - 6389876
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  6389732 tactccctccattcattttgttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttact 6389831  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  6389832 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 6389876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 360 - 496
Target Start/End: Original strand, 9876271 - 9876407
Alignment:
Q  360 ccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttgg 459  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  9876271 ccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttacccttgttgg 9876370  T
Q  460 aaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9876371 aaaacaccataaactattaaagtagttgtgacctttg 9876407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 29891103 - 29890959
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |    
T  29891103 tactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttctcaagtttatc 29891004  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  29891003 cttgatggaaaacacaataaactattaaagtagttgtgacttttg 29890959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 350 - 496
Target Start/End: Complemental strand, 41922133 - 41921987
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 449  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||    
T  41922133 tatactccctctatttcttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttaatattgttttatcaagttta 41922034  T
Q  450 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||    
T  41922033 cccttgttgaaaaacacaataaactattaaagtagttgcaacctttg 41921987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 349 - 496
Target Start/End: Original strand, 4405106 - 4405253
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 448  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||    
T  4405106 ttatactccctccatttcttttcttttgatgttttaaaacttcaactatattctaaaacatttgatgttttagtgaatttattattgttttctcaatttt 4405205  T
Q  449 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    | |||||||||||||||| ||||| |||||||||||||||||||||||    
T  4405206 atccttgttggaaaacaccataaattattaaagtagttgtgacctttg 4405253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 356 - 475
Target Start/End: Complemental strand, 31503210 - 31503091
Alignment:
Q  356 ccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttg 455  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  31503210 ccctccgttccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttcttaagtttacccttg 31503111  T
Q  456 ttggaaaacacaataaacta 475  Q
    ||||||||||| ||||||||    
T  31503110 ttggaaaacactataaacta 31503091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 351 - 461
Target Start/End: Complemental strand, 19523975 - 19523863
Alignment:
Q  351 atactccctccattccttttcttt--tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 448  Q
    |||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||    
T  19523975 atactccctctattccttttttttgttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttatcaagttt 19523876  T
Q  449 acccttgttggaa 461  Q
    |||||||||||||    
T  19523875 acccttgttggaa 19523863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 355 - 451
Target Start/End: Original strand, 9332364 - 9332460
Alignment:
Q  355 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  9332364 tccctccattttttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaggtttacc 9332460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 367 - 494
Target Start/End: Original strand, 33974506 - 33974636
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 466  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||| ||||| |||| ||||| ||||||||||||||||| |||||||    
T  33974506 ttttcttttgatgttttcgaacttcaactatattccaaaatattttatgttttagtatatttaatatttttttcccaagtttacccttgttgaaaaacac 33974605  T
Q  467 a--at-aaactattaaagtagttgtgacctt 494  Q
    |  || |||||||||||| ||||||||||||    
T  33974606 accataaaactattaaaggagttgtgacctt 33974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 12252069 - 12252216
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||| || || ||||| | |||||||| |||||||||     
T  12252069 tactccctccattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttctaatatatttaatcttgttttcccaagtttact 12252168  T
Q  452 cttgttggaaaacaca--at-aaactattaaagtagttgtgacctttg 496  Q
    || |||| ||||||||  || |||||||||||| |||| |||| ||||    
T  12252169 ctagttgaaaaacacaccataaaactattaaaggagttatgacttttg 12252216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 372 - 496
Target Start/End: Complemental strand, 9215722 - 9215595
Alignment:
Q  372 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaa--acacaat 469  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||| || || |||| |||| |||| ||||||||||||| |||  |||| ||    
T  9215722 ttttgatgttttagaacttcaactatattccaaaatatttaatgttttagtatatgtaatatttttttttcaaatttacccttgttgaaaaagacaccat 9215623  T
Q  470 -aaactattaaagtagttgtgacctttg 496  Q
     ||| |||||||| ||||||||||||||    
T  9215622 aaaattattaaaggagttgtgacctttg 9215595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 351 - 467
Target Start/End: Original strand, 43701550 - 43701666
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||  ||||||||||||| |  |||| |||| |||   ||| |||||    
T  43701550 atactccctccattccttttcttttgatgttttagaacttaaacttcattccaaaaaatttgatgttttagaatttttaatattttttatccaattttac 43701649  T
Q  451 ccttgttggaaaacaca 467  Q
    |||||||| ||||||||    
T  43701650 ccttgttgaaaaacaca 43701666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 29722955 - 29723070
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||  |  ||||||| | |||   ||| ||||||    
T  29722955 tactctctccattccttttcttttgatattttagaacttaaactttattccaaaacttttgatgttttataatttttattactttttatccaattttacc 29723054  T
Q  452 cttgttggaaaacaca 467  Q
    ||||||| ||||||||    
T  29723055 cttgttgaaaaacaca 29723070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 496
Target Start/End: Complemental strand, 31858374 - 31858225
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 448  Q
    ||||||||||||||||  |||||||||||||||||| |||||||||||||||  ||||  ||||||||||||||| ||||| | || ||||| ||| |||    
T  31858374 ttatactccctccattttttttcttttgatgttttacaacttcaactatattttaaaatatttgatgttttagtatatttaat-tttttttcccaaattt 31858276  T
Q  449 acccttgttggaaaacaca--at-aaactattaaagtagttgtgacctttg 496  Q
    ||||| |||| ||||||||  || ||| |||||||  ||||||||||||||    
T  31858275 accctcgttgaaaaacacatcataaaagtattaaatgagttgtgacctttg 31858225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 367 - 496
Target Start/End: Original strand, 46689878 - 46690011
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaa---a 463  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||   ||| |||| ||||| ||||||||||||| ||| |||   |    
T  46689878 ttttcttttgatgttttagaacttcaactatattccaaaatacttgatgttttagtatggttaatatttttttcccaagtttaccctttttgaaaaaaca 46689977  T
Q  464 cacaat-aaactattaaagtagttgtgacctttg 496  Q
    ||| || |||||||||||| ||||||||| ||||    
T  46689978 cacgataaaactattaaagaagttgtgacatttg 46690011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 467
Target Start/End: Complemental strand, 33379244 - 33379130
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  ||| |||||  ||||||||||||| |  |||| |||| || || ||| ||||||    
T  33379244 tactccctccatttcttttcttttgatgttttagaacttcaacttgatttcaaaatatttgatgttttaggatttttaatatttttatc-caattttacc 33379146  T
Q  452 cttgttggaaaacaca 467  Q
    ||||||| ||||||||    
T  33379145 cttgttgaaaaacaca 33379130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 497
Target Start/End: Original strand, 33915716 - 33915863
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    ||||||||||||||  |||||||||| |||||| ||| || ||||||||| |||||  ||||||||||||||| ||||| | || ||||| ||||||||     
T  33915716 atactccctccattt-ttttcttttgttgtttttgaattttaactatatttcaaaatatttgatgttttagtatatttaatttttttttcccaagttta- 33915813  T
Q  451 ccttgttggaaaacaca--at-aaactattaaagtagttgtgacctttgc 497  Q
    |||||||| ||||||||  || |||||||||||   ||||||||||||||    
T  33915814 ccttgttgaaaaacacaccataaaactattaaataggttgtgacctttgc 33915863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 49011120 - 49011058
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattta 429  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||    
T  49011120 ttttcttttgatgttttaggacttcaactatatttcaaaacatttgatgttttagtatattta 49011058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 496
Target Start/End: Original strand, 48049057 - 48049146
Alignment:
Q  410 ttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaat---aaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||| ||||| |||| ||||| ||||||||||| ||||| |||||||| |   |||||||||||| ||||||||||||||    
T  48049057 ttgatgttttagtatatttaatatttttttcccaagtttacccctgttgaaaaacacactagaaaactattaaaggagttgtgacctttg 48049146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 496
Target Start/End: Original strand, 5514797 - 5514923
Alignment:
Q  372 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaat-- 469  Q
    |||| |||||||||||||| || ||||||| ||||  ||||||  ||||||| ||||| |||| | || |||||||||||||||||  |||||||| |      
T  5514797 ttttaatgttttagaactttaaatatattctaaaatatttgattatttagtatatttaatatt-tattttcaagtttacccttgttaaaaaacacactat 5514895  T
Q  470 -aaactattaaagtagttgtgacctttg 496  Q
     |||||||||||  ||||||||||||||    
T  5514896 aaaactattaaaagagttgtgacctttg 5514923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 384
Target Start/End: Original strand, 46467332 - 46467367
Alignment:
Q  349 ttatactccctccattccttttcttttgatgtttta 384  Q
    ||||||||||||||||||||||||||||||||||||    
T  46467332 ttatactccctccattccttttcttttgatgtttta 46467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 4405387 - 4405353
Alignment:
Q  351 atactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||||||    
T  4405387 atactccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 29890825 - 29890859
Alignment:
Q  351 atactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||||||    
T  29890825 atactccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 17904440 - 17904407
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 29723414 - 29723381
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  29723414 tactccctccattccttttcttttgatgttttag 29723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 37179331 - 37179364
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 26770459 - 26770424
Alignment:
Q  349 ttatactccctccattccttttcttttgatgtttta 384  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26770459 ttatactccctccattcattttcttttgatgtttta 26770424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 6387692 - 6387725
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    |||| |||||||||||||||||||||||||||||    
T  6387692 tacttcctccattccttttcttttgatgttttag 6387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 22753257 - 22753201
Alignment:
Q  442 caagtttacccttgttggaaaacaca--ataaactattaaagtagttgtgacctttg 496  Q
    ||||||||| |||||||||||||| |  |||||||||||||  ||||||||||||||    
T  22753257 caagtttacgcttgttggaaaacaaactataaactattaaaaaagttgtgacctttg 22753201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 9332601 - 9332565
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  9332601 ttatactccctccatttcttttcttttgatattttag 9332565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 31502650 - 31502685
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||| |||||||||||||||||||    
T  31502650 ttatactccctccattc-ttttcttttgatgttttag 31502685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 349 - 496
Target Start/End: Complemental strand, 29371818 - 29371671
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29371818 ttatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttt 29371719  T
Q  449 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29371718 acccttgttggaaaacacaataaactattaaagtacttgtgacctttg 29371671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 351 - 495
Target Start/End: Complemental strand, 1352274 - 1352130
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  1352274 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttac 1352175  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgaccttt 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1352174 ccttgttggaaaacacaataaactattaaagtagttgtgaccttt 1352130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 18996967 - 18997111
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18997066  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  18997067 cttgttggaaaacacaataaactattaaagtagttgtgacttttg 18997111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 18999506 - 18999650
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18999605  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  18999606 cttgttggaaaacacaataaactattaaagtagttgtgacttttg 18999650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 32677754 - 32677610
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 32677655  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32677654 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 32677610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 39528749 - 39528893
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  39528749 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 39528848  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39528849 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 39528893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 41349648 - 41349504
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  41349648 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 41349549  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41349548 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 41349504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 339 - 496
Target Start/End: Original strand, 55365895 - 55366052
Alignment:
Q  339 tgtgtttaggttatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttt 438  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||    
T  55365895 tgtgtgtagtttatactcccttcattccttttcttttgatgttttagaacttcaactatatttcaaattttttgatgttttagtgaatttattattgttt 55365994  T
Q  439 tctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55365995 tctcaagtttacccttgttagaaaacacaataaactattaaagtagttgtgacctttg 55366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 28228436 - 28228580
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28228436 tactctctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 28228535  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||    
T  28228536 cttgttggaaaatacaataaactattaaagtagctgtgacatttg 28228580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 39807256 - 39807112
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  39807256 tacttcctccattccttttcttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 39807157  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    || ||||||||||||||||||||||||||||||||||||||||||    
T  39807156 ctcgttggaaaacacaataaactattaaagtagttgtgacctttg 39807112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 355 - 496
Target Start/End: Original strand, 21974152 - 21974293
Alignment:
Q  355 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccctt 454  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  21974152 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttaccttt 21974251  T
Q  455 gttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  21974252 gttggaaaacaccataaaatattaaagtagttgtgacctttg 21974293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 355 - 496
Target Start/End: Original strand, 21996583 - 21996724
Alignment:
Q  355 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccctt 454  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  21996583 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttaccttt 21996682  T
Q  455 gttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  21996683 gttggaaaacaccataaaatattaaagtagttgtgacctttg 21996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 36738112 - 36737967
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  36738112 atactccattcattccttttcttttgatgttttagaactttaactatattttaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 36738013  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
     |||||||||||||||||||||||||||||||||||||||| ||||    
T  36738012 tcttgttggaaaacacaataaactattaaagtagttgtgacatttg 36737967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 358 - 496
Target Start/End: Original strand, 38855323 - 38855461
Alignment:
Q  358 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 457  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  38855323 ctccattccttttcttttgatgttttaaaacatcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttatccttgtt 38855422  T
Q  458 ggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    | ||||||| |||||||||||||||||||||||||||||    
T  38855423 gaaaaacaccataaactattaaagtagttgtgacctttg 38855461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 355 - 496
Target Start/End: Original strand, 22157261 - 22157402
Alignment:
Q  355 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccctt 454  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||| ||    
T  22157261 tccctccatttcttttcttttgatgttttagaacttcaactatattctaaaacttttgatattttagtgaatttattattgttttctcaggtttaccttt 22157360  T
Q  455 gttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  22157361 gttggaaaacaccataaaatattaaagtagttgtgacctttg 22157402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 359 - 487
Target Start/End: Complemental strand, 29014960 - 29014832
Alignment:
Q  359 tccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg 458  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29014960 tccattctttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 29014861  T
Q  459 gaaaacacaataaactattaaagtagttg 487  Q
    ||||||||| |||||||||||||||||||    
T  29014860 gaaaacacattaaactattaaagtagttg 29014832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 367 - 496
Target Start/End: Original strand, 39518422 - 39518551
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 466  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  39518422 tttttttttgatgttttaaaacttcaactatatttcaaaacttttgatattttagtgaatttattattgttttctcaagtttatccttgttggaaaacac 39518521  T
Q  467 aataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||| |||| ||||    
T  39518522 aataaactattaaagtagttatgacatttg 39518551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 32839949 - 32840092
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||  |||  ||||||||||||||| || |||||||| |||||| ||||||  |    
T  32839949 tactccctccattcattttctttttatattttagaacttcaactatattttaaattttttgatgttttagtgaa-ttattattattttcttaagtttgtc 32840047  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||| |||||||||||||||||||||| |||||||||| ||||    
T  32840048 cttgttagaaaacacaataaactattaaaatagttgtgacatttg 32840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 367 - 496
Target Start/End: Complemental strand, 49041107 - 49040977
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaaca- 465  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| ||||| |||  ||||| || |||||||||||||| ||||||     
T  49041107 ttttcttttgatgttttagaacttcaactatgttccaaaatatttgatgttttagtatatttaatat--ttttcccacgtttacccttgttgaaaaacaa 49041010  T
Q  466 --caataaactattaaagtagttgtgacctttg 496  Q
      ||  |||||||||||| ||||| ||||||||    
T  49041009 accataaaactattaaaggagttgggacctttg 49040977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 49319347 - 49319416
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 421  Q
    |||| |||||||||||||||||||||||||||||||||| ||||  |||| |||| ||||||||||||||    
T  49319347 tacttcctccattccttttcttttgatgttttagaacttaaacttcattctaaaaattttgatgttttag 49319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 39518687 - 39518651
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||||||||    
T  39518687 ttatactccctccattccttttcttttgatgttttag 39518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 385
Target Start/End: Original strand, 41349369 - 41349404
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||||    
T  41349369 tatactccctccattccttttcttttgatgttttag 41349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 29014689 - 29014723
Alignment:
Q  351 atactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||||||    
T  29014689 atactccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 36737833 - 36737867
Alignment:
Q  351 atactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||||||    
T  36737833 atactccctccattccttttcttttgatgttttag 36737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 38855595 - 38855561
Alignment:
Q  351 atactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||||||    
T  38855595 atactccctccattccttttcttttgatgttttag 38855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 1351996 - 1352029
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgttttag 1352029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 18997244 - 18997211
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  18997244 tactccctccattccttttcttttgatgttttag 18997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 18999783 - 18999750
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  18999783 tactccctccattccttttcttttgatgttttag 18999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 39529026 - 39528993
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgttttag 39528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 46879012 - 46878980
Alignment:
Q  352 tactccctccattccttttcttttgatgtttta 384  Q
    |||||||||||||||||||||||||||||||||    
T  46879012 tactccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 464
Target Start/End: Original strand, 837370 - 837455
Alignment:
Q  377 atgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaac 464  Q
    |||||||||||||||||||| |||| |||| ||||||| |||||||| | ||| |||| |||| |||||||||||  ||||| |||||    
T  837370 atgttttagaacttcaactaaattctaaaa-ttttgatattttagtataattaatatt-ttttttcaagtttacctgtgttgaaaaac 837455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 29371538 - 29371571
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||| |||||||||||||||||||    
T  29371538 tactccctccattcattttcttttgatgttttag 29371571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 32677477 - 32677510
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||| |||||||||||||||||||    
T  32677477 tactccctccattcattttcttttgatgttttag 32677510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 39806979 - 39807012
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    |||||||| |||||||||||||||||||||||||    
T  39806979 tactcccttcattccttttcttttgatgttttag 39807012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 458
Target Start/End: Complemental strand, 34667762 - 34667662
Alignment:
Q  358 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 457  Q
    ||||||| | |||||||||||||||||| ||||||||| || | |||||  |||||| |||||| |  |||  |||| |||  |||| ||||||||||||    
T  34667762 ctccatttcgtttcttttgatgttttaggacttcaactttaattcaaaatatttgatcttttagaatgtttgatattttttattcaattttacccttgtt 34667663  T
Q  458 g 458  Q
    |    
T  34667662 g 34667662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 6e-72; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 33838007 - 33837862
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  33838007 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttac 33837908  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33837907 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 33837862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 2509073 - 2508929
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2509073 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 2508974  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  2508973 cttgttggaaaacacagtaaactattaaagtagttgtgacctttg 2508929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 28378947 - 28379091
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28378947 tactccctccattatttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 28379046  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28379047 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 28379091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 45334553 - 45334409
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  45334553 tactccctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttttcaagtttacc 45334454  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45334453 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 45334409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 350 - 496
Target Start/End: Original strand, 25106209 - 25106355
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 449  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||||    
T  25106209 tatactctctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttttcaagttta 25106308  T
Q  450 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||    
T  25106309 cccttgatggaaaacacaataaactattaaagtagttgtgacttttg 25106355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 357 - 482
Target Start/End: Complemental strand, 13469777 - 13469652
Alignment:
Q  357 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgt 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  13469777 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatattttagtaaatttataattgttttctcaagtttacccttgt 13469678  T
Q  457 tggaaaacacaataaactattaaagt 482  Q
    ||||||||||||||||||||||||||    
T  13469677 tggaaaacacaataaactattaaagt 13469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 351 - 496
Target Start/End: Original strand, 9739984 - 9740129
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| | |||||||||||| |||||||||||||     
T  9739984 atactccctccattccttttcttttgatgttttagaacttcatgtatatttcaaaacttttgatgttttactgaatttattattgctttctcaagtttat 9740083  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    
T  9740084 ccttgttgaaaaacacaataaactattaaagtagttgtgacatttg 9740129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 38495749 - 38495605
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||    
T  38495749 tacttcctccattctttttcttgtgatgttttagaacttcaactatattctaaaatttttgatgttttggtgaatttattattgttttctcaagtttacc 38495650  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  38495649 cttgttggaaaacacaataaactattaaagtagttatgacatttg 38495605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 351 - 475
Target Start/End: Complemental strand, 27793469 - 27793345
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  27793469 atactccttccattcattttcttttgatgttttagatcttcaactatattccaaaacttttaatgttttagtgaatttattattgttttctcaagtttac 27793370  T
Q  451 ccttgttggaaaacacaataaacta 475  Q
     ||||||||||||||||||||||||    
T  27793369 tcttgttggaaaacacaataaacta 27793345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 396 - 496
Target Start/End: Complemental strand, 2626472 - 2626371
Alignment:
Q  396 atattccaaaacttttgatgttttagtaaatttattatt-gttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctt 494  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2626472 atattccaaaacttttgatgttttagtgaatttattatttgttttctcaagtttacccttgttggaaaacacaataaactattaaagtaattgtgacctt 2626373  T
Q  495 tg 496  Q
    ||    
T  2626372 tg 2626371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 350 - 496
Target Start/End: Complemental strand, 32183761 - 32183614
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 449  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| |||| ||||| ||||||||    
T  32183761 tatactcccttcattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttttagtatatttaatatttttttcccaagttta 32183662  T
Q  450 cccttgttggaaaacaca--ataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||  |||||||||| ||| ||||| ||||||||    
T  32183661 cccttgttggaaaacacaccataaactatt-aaggagttgcgacctttg 32183614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 27024432 - 27024502
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 421  Q
    |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  27024432 atactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 27024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 25979037 - 25978969
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 419  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| |||||||||||    
T  25979037 atactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgtttt 25978969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 467
Target Start/End: Original strand, 8235161 - 8235276
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    ||||||||||||||  ||||||||||||||||||| ||||||| | |||| |||||| ||||||||||||  |  |||| |||| |||  |||| |||||    
T  8235161 atactccctccatttattttcttttgatgttttaggacttcaattttatttcaaaacatttgatgttttaagatttttaatatt-tttcttcaattttac 8235259  T
Q  451 ccttgttggaaaacaca 467  Q
    |||||||| ||||||||    
T  8235260 ccttgttgaaaaacaca 8235276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 467
Target Start/End: Complemental strand, 3203492 - 3203413
Alignment:
Q  387 acttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca 467  Q
    ||||||||||||||  ||||  ||||||||||||||| ||||| |||| |||||||||||||| | |||||| ||||||||    
T  3203492 acttcaactatattttaaaatatttgatgttttagtatatttaatatt-ttttctcaagtttatctttgttgaaaaacaca 3203413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 414
Target Start/End: Complemental strand, 2626714 - 2626667
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgat 414  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||    
T  2626714 ttttttttttatattttagaacttcaactatattccaaaacttttgat 2626667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 27027690 - 27027655
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||||    
T  27027690 tatactccctccattccttttcttttgatgttttag 27027655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 25106488 - 25106455
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  25106488 tactccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 28379224 - 28379191
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  28379224 tactccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 33837729 - 33837762
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 45334276 - 45334309
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  45334276 tactccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 9740263 - 9740231
Alignment:
Q  352 tactccctccattccttttcttttgatgtttta 384  Q
    |||||||||||||||||||||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgtttta 9740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 13469507 - 13469540
Alignment:
Q  351 atactccctccattccttttcttttgatgtttta 384  Q
    ||||||| ||||||||||||||||||||||||||    
T  13469507 atactccttccattccttttcttttgatgtttta 13469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 38495472 - 38495505
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||| |||||||||||||||||||    
T  38495472 tactccctccattcattttcttttgatgttttag 38495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 25978715 - 25978751
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttag 385  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  25978715 ttatactacctccatttcttttcttttgatgttttag 25978751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 27312394 - 27312249
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  27312394 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttac 27312295  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27312294 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 27312249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 351 - 496
Target Start/End: Original strand, 32274433 - 32274578
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  32274433 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttac 32274532  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32274533 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 32274578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 354 - 496
Target Start/End: Complemental strand, 8504977 - 8504835
Alignment:
Q  354 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 453  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  8504977 ctccctccattcattttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaggtttaccct 8504878  T
Q  454 tgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  8504877 tgttgaaaaacacaataaactattaaagtagttgtgacctttg 8504835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 359 - 496
Target Start/End: Original strand, 5003889 - 5004026
Alignment:
Q  359 tccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg 458  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5003889 tccattcatttttttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 5003988  T
Q  459 gaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  5003989 gaaaacacaataaactattaaagtagttttgacatttg 5004026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 29452821 - 29452675
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttatta-ttgttttctcaagttta 449  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||  | ||||||||||||| ||||||||| |||||||||||||||||    
T  29452821 atactccctccatttcttttcttctgatgttttagaacttcaactatattctaaatttcttgatgttttagtgaatttattacttgttttctcaagttta 29452722  T
Q  450 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    | ||||||||||||||| ||||||||||||| |||||||||||||||    
T  29452721 cacttgttggaaaacaccataaactattaaaatagttgtgacctttg 29452675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 349 - 454
Target Start/End: Original strand, 12174697 - 12174802
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 448  Q
    ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12174697 ttatactccctccattccttttcttttaatgttttagaactttaaatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttt 12174796  T
Q  449 accctt 454  Q
    ||||||    
T  12174797 accctt 12174802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 31171267 - 31171123
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||| |||||||||||||| ||||||| ||||| | ||||||||||| || |||||| |||| |||||||||||||||||||||||||| |    
T  31171267 tactccctccatttcttttcttttgatgatttagaaattcaaatgtattccaaaacattagatgttgtagtgaatttattattgttttctcaagtttatc 31171168  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
     || |||||||||||  |||||||||||| |||||||||||||||    
T  31171167 tttattggaaaacaccttaaactattaaaatagttgtgacctttg 31171123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 18741947 - 18742062
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||| ||||| |||||| ||||||| ||||||    
T  18741947 tactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgttttagtatatttaatattgtattctcaaatttacc 18742046  T
Q  452 cttgttggaaaacaca 467  Q
    ||||||| ||||||||    
T  18742047 cttgttgaaaaacaca 18742062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 413 - 496
Target Start/End: Original strand, 2543142 - 2543225
Alignment:
Q  413 atgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  2543142 atgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacacaataaactattaaagtagttgtgacatttg 2543225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 7156503 - 7156370
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    |||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||| ||||||||||| ||||||||||||||||               
T  7156503 atactccctccatttcttttcttttgatgttttagacaatcaactatattccaaaactttagatgttttagtgaatttattattgtttt----------- 7156415  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
     ||||||||||||||| |||||||||||||||| ||||||| ||||    
T  7156414 -cttgttggaaaacaccataaactattaaagtaattgtgacatttg 7156370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 29302548 - 29302500
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatatt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgttttagaacttcaactatatt 29302500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 27312113 - 27312147
Alignment:
Q  351 atactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||||||    
T  27312113 atactccctccattccttttcttttgatgttttag 27312147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 8504733 - 8504766
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgttttag 8504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 2543359 - 2543325
Alignment:
Q  351 atactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||| |||||||||||||||||||    
T  2543359 atactccctccattcgttttcttttgatgttttag 2543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 32274711 - 32274678
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||| |||||||||||||||||||    
T  32274711 tactccctccattcattttcttttgatgttttag 32274678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 18742223 - 18742191
Alignment:
Q  352 tactccctccattccttttcttttgatgtttta 384  Q
    ||||||||||||| |||||||||||||||||||    
T  18742223 tactccctccatttcttttcttttgatgtttta 18742191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 351 - 496
Target Start/End: Original strand, 47669118 - 47669263
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  47669118 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttac 47669217  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47669218 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 47669263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 352 - 495
Target Start/End: Original strand, 46220259 - 46220402
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  46220259 tactccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 46220358  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgaccttt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46220359 cttgttggaaaacacaataaactattaaagtagttgtgaccttt 46220402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 349 - 490
Target Start/End: Original strand, 4817266 - 4817407
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  4817266 ttatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttatcattgttttctcaagttt 4817365  T
Q  449 acccttgttggaaaacacaataaactattaaagtagttgtga 490  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  4817366 acccttgttggaaaacacaataaactattaaggtagttgtga 4817407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 10737978 - 10737834
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10737978 tactcccttcattccttttcttttaatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 10737879  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10737878 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 10737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 9831503 - 9831647
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  9831503 tactccctccattccttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttgttattattttctcaagtttacc 9831602  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  9831603 cttgttggaaaacacaataaactattaaaatagttgtgacctttg 9831647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 18126851 - 18126994
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18126851 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18126950  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||    
T  18126951 cttgttggaaaacacaacaaactatt-aagtagttgtgacttttg 18126994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 352 - 496
Target Start/End: Complemental strand, 3384870 - 3384728
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||| |  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3384870 tactcccttcattctttttcttttgatgttttagaacctcaactattt--caaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 3384773  T
Q  452 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3384772 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 3384728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 351 - 488
Target Start/End: Original strand, 4055483 - 4055620
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  4055483 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaattaattattgttttctcaagtttac 4055582  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgt 488  Q
    |||| ||||||||||||||  ||| |||||||||||||    
T  4055583 ccttattggaaaacacaattcactgttaaagtagttgt 4055620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 351 - 496
Target Start/End: Original strand, 48564817 - 48564961
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  48564817 atactccctccattacttttcttt-gatgttttaaaacttcaactatattccaaaaattttgatgttttagtgaatttattattgttttctcaagtttac 48564915  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  48564916 ccttgatggaaaacacaataaactattaaagtagttgtgacttttg 48564961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 367 - 491
Target Start/End: Original strand, 8889457 - 8889581
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 466  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  8889457 ttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacac 8889556  T
Q  467 aataaactattaaagtagttgtgac 491  Q
    |||||||||||||||||||||||||    
T  8889557 aataaactattaaagtagttgtgac 8889581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 353 - 496
Target Start/End: Original strand, 7414208 - 7414351
Alignment:
Q  353 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 452  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||  |||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  7414208 actccctccattcatttttttttgatgttttagaacttcaactatattttaaattttttgatgttttagtgaatttattattgttttctcaagtttaccc 7414307  T
Q  453 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  7414308 ttgttgaaaaacacaataaactattaaagtagttgtgacatttg 7414351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 352 - 454
Target Start/End: Complemental strand, 1236307 - 1236205
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1236307 tactccctccattcattttcttttgatgttttagaactttaactatattccaaaacttttgatggtttagtgaatttattattgttttctcaagtttacc 1236208  T
Q  452 ctt 454  Q
    |||    
T  1236207 ctt 1236205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 372 - 496
Target Start/End: Original strand, 39241172 - 39241296
Alignment:
Q  372 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaag-tttacccttgttggaaaacacaata 470  Q
    |||| ||||||||||| |||||||||||| ||||||||||| ||||| ||| |||||||||||||| | ||||| ||||| ||||||| ||||||| |||    
T  39241172 ttttaatgttttagaa-ttcaactatatttcaaaacttttgttgtttcagtgaatttattattgttgtatcaagttttactcttgttgaaaaacaccata 39241270  T
Q  471 aactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||||| ||||    
T  39241271 aactattaaagtagttgtgacttttg 39241296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 351 - 431
Target Start/End: Complemental strand, 1749601 - 1749521
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttatt 431  Q
    ||||| |||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||    
T  1749601 atacttcctctattccttttcttttgatgttttagaactttaattatataccaaaacttttgatgttttagtgaatttatt 1749521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 33020206 - 33020275
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 421  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||    
T  33020206 tactccctccattccttttcttttgatgttttagagcttaaacttttttccaaaacttttgatgttttag 33020275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 467
Target Start/End: Original strand, 26842462 - 26842552
Alignment:
Q  375 tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca 467  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| ||||| |||  |||| ||||||||| |||||||| ||||||||    
T  26842462 tgatgttttagaacttcaactatatttcaaaatatttgatgttttagtatatttaatat--ttttttcaagtttatccttgttgaaaaacaca 26842552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 467
Target Start/End: Complemental strand, 33846936 - 33846820
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattt-attattgttttctcaagttta 449  Q
    ||||||||||||||  ||||||||||||||||||  ||||||| | ||||  ||||  |||||||||| |||| |||| ||| || ||| ||||||||||    
T  33846936 atactccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagttta 33846838  T
Q  450 cccttgttggaaaacaca 467  Q
    ||||||||  ||||||||    
T  33846837 cccttgttaaaaaacaca 33846820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 467
Target Start/End: Original strand, 33947042 - 33947158
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattt-attattgttttctcaagttta 449  Q
    ||||||||||||||  ||||||||||||||||||  ||||||| | ||||  ||||  |||||||||| |||| |||| ||| || ||| ||||||||||    
T  33947042 atactccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagttta 33947140  T
Q  450 cccttgttggaaaacaca 467  Q
    ||||||||  ||||||||    
T  33947141 cccttgttaaaaaacaca 33947158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 37875849 - 37875920
Alignment:
Q  409 tttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaa 480  Q
    ||||||||||||||| ||||| | ||||||||||||||||| |||||||| |||| |||  | |||||||||    
T  37875849 tttgatgttttagtatatttaatgttgttttctcaagtttatccttgttgaaaaatacaccatactattaaa 37875920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 10737700 - 10737734
Alignment:
Q  351 atactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||||||    
T  10737700 atactccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 385
Target Start/End: Complemental strand, 46220537 - 46220503
Alignment:
Q  351 atactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||||||    
T  46220537 atactccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 47669396 - 47669363
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 1236071 - 1236103
Alignment:
Q  353 actccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttag 1236103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 33023464 - 33023428
Alignment:
Q  349 ttatactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||| |||||||    
T  33023464 ttatactccctccattccttttcttttgacgttttag 33023428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 48565095 - 48565063
Alignment:
Q  351 atactccctccattccttttcttttgatgtttt 383  Q
    |||||||||||||||||||||||||||||||||    
T  48565095 atactccctccattccttttcttttgatgtttt 48565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 467
Target Start/End: Complemental strand, 49112535 - 49112439
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 466  Q
    |||||||||||||||    ||||| |||||||||  ||||  ||||||||||||||| |||||  ||||||||   || ||||||||||||| |||||||    
T  49112535 ttttcttttgatgtt----aactttaactatattttaaaatatttgatgttttagtatatttaacattgtttttctaaatttacccttgttgaaaaacac 49112440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 385
Target Start/End: Complemental strand, 9831777 - 9831747
Alignment:
Q  355 tccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||    
T  9831777 tccctccattccttttcttttgatgttttag 9831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 385
Target Start/End: Original strand, 37875726 - 37875760
Alignment:
Q  351 atactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||| ||||||||||||||||||||    
T  37875726 atactccctccatttcttttcttttgatgttttag 37875760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 8889720 - 8889687
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||| ||||||||||||||    
T  8889720 tactccctccattccttttattttgatgttttag 8889687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 354 - 496
Target Start/End: Original strand, 15233757 - 15233899
Alignment:
Q  354 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 453  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15233757 ctccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccct 15233856  T
Q  454 tgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15233857 tgttggaaaacacaataaactattaaagtagttgtgacctttg 15233899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 350 - 496
Target Start/End: Complemental strand, 43041128 - 43040982
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 449  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  43041128 tatactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaatttta 43041029  T
Q  450 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  43041028 cccttgttggaaaacaccataaactattaaagtagttgtgacctttg 43040982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 35793184 - 35793040
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  35793184 atactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagagaatttattattgtttt-tcaagtttac 35793086  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  35793085 ccttgttggaaaacacaataaactattaaagtagttgtgacatttg 35793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 351 - 496
Target Start/End: Original strand, 41252414 - 41252559
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||     
T  41252414 atactccctccattccttttctttttatgttttagaacttcaaatatattccaaaacttttgatgttttagtgaatttattattgtgttctcaagtttat 41252513  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41252514 ccttgttggaaaatacaataaactattaaagtagttgtgacatttg 41252559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 350 - 490
Target Start/End: Original strand, 31296081 - 31296221
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 449  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  31296081 tatactccttccattctttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaaattta 31296180  T
Q  450 cccttgttggaaaacacaataaactattaaagtagttgtga 490  Q
    || |||||| |||||||||||||||||||||||||||||||    
T  31296181 cctttgttgaaaaacacaataaactattaaagtagttgtga 31296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 352 - 495
Target Start/End: Complemental strand, 44104833 - 44104683
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  44104833 tactccctccgttccttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaagtttacc 44104734  T
Q  452 c-------ttgttggaaaacacaataaactattaaagtagttgtgaccttt 495  Q
    |       ||||||||||||||||||||||||||| |||||||||||||||    
T  44104733 cttataaattgttggaaaacacaataaactattaaggtagttgtgaccttt 44104683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 41642891 - 41643038
Alignment:
Q  352 tactccctccattccttttcttttgatgtttt-agaacttcaactata--ttccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 448  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41642891 tactccctccatttcttttcttttgatgtttttagaatttcaactatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttt 41642990  T
Q  449 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||| ||  |||||||||| |||||||||||||||||||||||||||||    
T  41642991 accttttctggaaaacaccataaactattaaagtagttgtgacctttg 41643038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 367 - 496
Target Start/End: Complemental strand, 31903641 - 31903513
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 466  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  31903641 tttttttttgatgttttagaacttcaaatatattccaaattttttgatgttttagtaaatttattattgttttatc-agtttacccttattggaaaacac 31903543  T
Q  467 aataaactattaaagtagttgtgacctttg 496  Q
     |||||||||||||||||||||||||||||    
T  31903542 cataaactattaaagtagttgtgacctttg 31903513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 10118729 - 10118660
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 421  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||    
T  10118729 tactccctccattccttttcttttgatattttagagcttaaactttattccaaaacttttgatgttttag 10118660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 367 - 489
Target Start/End: Original strand, 21727684 - 21727809
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg--gaaaac 464  Q
    |||||||||||||||||||||||||||||||||| |||||  ||||||||||| ||| |  || |||| ||| | ||| |||||||||||||   |||||    
T  21727684 ttttcttttgatgttttagaacttcaactatatttcaaaatatttgatgttttggtataactaatattttttccccaaatttacccttgttgaaaaaaac 21727783  T
Q  465 acaat-aaactattaaagtagttgtg 489  Q
    ||||| |||||||||||| |||||||    
T  21727784 acaataaaactattaaaggagttgtg 21727809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 385
Target Start/End: Original strand, 10112337 - 10112372
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||||    
T  10112337 tatactccctccattccttttcttttgatgttttag 10112372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 36963130 - 36963200
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 421  Q
    |||||| ||| |||||||||||||| ||||||||||| || |||| |||| |||||  |||||||||||||    
T  36963130 atactcgctctattccttttcttttaatgttttagaatttaaactttatttcaaaaaatttgatgttttag 36963200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 15234032 - 15233999
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  15234032 tactccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 43040849 - 43040882
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||||||||||||||||||||    
T  43040849 tactccctccattccttttcttttgatgttttag 43040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 44104546 - 44104578
Alignment:
Q  352 tactccctccattccttttcttttgatgtttta 384  Q
    |||||||||||||||||||||||||||||||||    
T  44104546 tactccctccattccttttcttttgatgtttta 44104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 6e-63; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 350 - 496
Target Start/End: Original strand, 45590740 - 45590886
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 449  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||||||||    
T  45590740 tatactccctccattcattttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaattcattattgttttatcaagttta 45590839  T
Q  450 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    || ||||||||||||||||||||||||||||||||||||||||||||    
T  45590840 cctttgttggaaaacacaataaactattaaagtagttgtgacctttg 45590886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 350 - 496
Target Start/End: Complemental strand, 8956055 - 8955909
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 449  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  8956055 tatactccctccattcctttttttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttatcaagttta 8955956  T
Q  450 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  8955955 cccttattggaaaacacaataaattattaaagtagttgtgacctttg 8955909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 362 - 496
Target Start/End: Original strand, 34334342 - 34334476
Alignment:
Q  362 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaa 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||    
T  34334342 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgctttagtgaatttattattgtcttctcaagtttacccttgttgaaa 34334441  T
Q  462 aacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||||||||||||| |||||    
T  34334442 aacacaataaactattaaagtagttgtgatctttg 34334476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 33288683 - 33288538
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 450  Q
    |||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33288683 atactccctccatttcttttcttttgatattttagaacttcaattatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 33288584  T
Q  451 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    || ||||||||||||||||| |||  ||||||||||||||| ||||    
T  33288583 ccatgttggaaaacacaatatactgataaagtagttgtgacatttg 33288538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 358 - 496
Target Start/End: Original strand, 49162108 - 49162245
Alignment:
Q  358 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 457  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  49162108 ctccattcattttcttttgatgtttcagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttctcaatttta-ccttgtt 49162206  T
Q  458 ggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  49162207 ggaaaacaccataaactattaaagtagttgtaacctttg 49162245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 352 - 496
Target Start/End: Original strand, 18835705 - 18835851
Alignment:
Q  352 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagt--aaatttattattgttttctcaagttta 449  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | || ||||||||||||||||| ||||    
T  18835705 tactcccttcatttattttcttttgatgttttagaacttcaactatattccaaaactttcgatgttttagtgaatatatattattgttttctcaaattta 18835804  T
Q  450 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
     ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  18835805 tccttgttagaaaacatcataaactattaaagtagttgtgacatttg 18835851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 351 - 444
Target Start/End: Complemental strand, 30469446 - 30469353
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaa 444  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30469446 atactcccttcattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 30469353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 355 - 451
Target Start/End: Original strand, 39481906 - 39482002
Alignment:
Q  355 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 451  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39481906 tccctccatttcttttcttttgatgttttagaacttcaactattttccaaaacttttgatgttttagtaaatttattattgttttctcaggtttacc 39482002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 367 - 496
Target Start/End: Complemental strand, 50774325 - 50774191
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatg-----ttttagtaaatttattattgttttctcaagtttacccttgttggaa 461  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||||      ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  50774325 tttttttttgatgttttagaactttaactatatttcaaaacttttgatacagtattttagtgaatttattattgttttctcaagtttactcttgttggaa 50774226  T
Q  462 aacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||||||||||||||||| |||| ||||| ||||    
T  50774225 aacacaataaactattaaattagtcgtgacttttg 50774191  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 19256185 - 19256255
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 421  Q
    |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  19256185 atactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 19256255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 350 - 467
Target Start/End: Complemental strand, 26025802 - 26025685
Alignment:
Q  350 tatactccctccattcctttt-cttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 448  Q
    |||||||||||||||  |||| ||||||||||||||| ||||||||||||||||||||  |||||  |||||||| ||||| |||| ||||| |||||||    
T  26025802 tatactccctccatttttttttcttttgatgttttaggacttcaactatattccaaaatatttgacattttagtatatttaatatt-ttttcccaagttt 26025704  T
Q  449 acccttgttggaaaacaca 467  Q
    |||||||||| ||||||||    
T  26025703 acccttgttgaaaaacaca 26025685  T

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Target: chr4; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 36971115 - 36971192
Alignment:
Q  418 ttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  36971115 ttagtgaatttattattgttttctgaagtttacc-ttgttggaaaacacaataaactattaaaatagttgtgacctttg 36971192  T

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Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 402
Target Start/End: Original strand, 36016278 - 36016329
Alignment:
Q  351 atactccctccattccttttcttttgatgttttagaacttcaactatattcc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016278 atactccctccattccttttcttttgatgttttagaacttcaactatattcc 36016329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 36968353 - 36968407
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 421  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36968353 tttttttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 36968407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 496
Target Start/End: Complemental strand, 33109163 - 33109031
Alignment:
Q  367 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 466  Q
    ||||||||| ||||||||| ||||||||||||||  ||||   |||||||||||||| ||||| |||| |||||| ||||||| |||||||  |||||||    
T  33109163 ttttcttttaatgttttaggacttcaactatattttaaaataattgatgttttagtatatttaatatttttttcttaagtttatccttgttaaaaaacac 33109064  T
Q  467 a--at-aaactattaaagtagttgtgacctttg 496  Q
    |  || |||||||||||  ||||||||||||||    
T  33109063 accataaaactattaaatgagttgtgacctttg 33109031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 386
Target Start/End: Complemental strand, 19257137 - 19257103
Alignment:
Q  352 tactccctccattccttttcttttgatgttttaga 386  Q
    |||||||||||||||||||||||||||||||||||    
T  19257137 tactccctccattccttttcttttgatgttttaga 19257103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 49162367 - 49162332
Alignment:
Q  350 tatactccctccattccttttcttttgatgttttag 385  Q
    ||||||||||||||||| ||||||||||||||||||    
T  49162367 tatactccctccattccctttcttttgatgttttag 49162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 385
Target Start/End: Original strand, 8955779 - 8955809
Alignment:
Q  355 tccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||||||||||||||||||||    
T  8955779 tccctccattccttttcttttgatgttttag 8955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 45591019 - 45590986
Alignment:
Q  352 tactccctccattccttttcttttgatgttttag 385  Q
    |||||||||||||| |||||||||||||||||||    
T  45591019 tactccctccattcattttcttttgatgttttag 45590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 39482138 - 39482106
Alignment:
Q  353 actccctccattccttttcttttgatgttttag 385  Q
    |||||||||||| ||||||||||||||||||||    
T  39482138 actccctccatttcttttcttttgatgttttag 39482106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 350 - 496
Target Start/End: Original strand, 44617 - 44764
Alignment:
Q  350 tatactccctccattccttttcttt-tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 448  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  44617 tatactcccttcattccttttctttctgatgtttgagaacttcaactatattccaaaacttttgaggttttagtgaatttattattgttttctcaagttt 44716  T
Q  449 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 496  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  44717 acccttgttgaaaaacacaataaactattaaagtagttgtgacctttg 44764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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