View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16625_low_8 (Length: 321)

Name: NF16625_low_8
Description: NF16625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16625_low_8
NF16625_low_8
[»] chr2 (1 HSPs)
chr2 (16-313)||(45342546-45342843)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 45342546 - 45342843
Alignment:
Q  16 gaaacaagcagtggttttctaccattaatgaagatttcaaacactcggtaaagctcggcaacgattccaaaatggtggtaatgggaaaagggaacatttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45342546 gaaacaagcagtggttttctaccattaatgaagatttcaaacactcggtaaagctcggcaacgattccaaaatggtggtaatgggaaaagggaacatttg 45342645  T
Q  116 acttgagatcaatggtgcaattcaagtagtcactgatgtctactatgttccaaagttgaaaaataacttactgaatgtaggccaacttcaagaaaaagga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45342646 acttgagatcaatggtgcaattcaagtagtcactgatgtctactatgttccaaagttgaaaaataacttactgaatgtaggccaacttcaagaaaaagga 45342745  T
Q  216 ttaactttacttatacaaaataaaacatgcaagttattccatcaaagaagaggattgttcatgcaaacaaaaatgacagcaaatcgaatgtctgtgct 313  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45342746 ttaactttacttatacaaaatgaaacatgcaagttattccatcaaagaagaggattgttcatgcaaacaaaaatgacagcaaatcgaatgtttgtgct 45342843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University