View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_high_10 (Length: 376)
Name: NF16626_high_10
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 7829426 - 7829066
Alignment:
| Q |
1 |
gataagttgatgtcaacaattctgtcgggataaaaatcaggtggaaagaactttaatgggaaccccatccagtcaagtagccgtaaactatttggtaaac |
100 |
Q |
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| T |
7829426 |
gataagttgatgtcaacaattctgtcgggataaaaatcaggtggaaagaactttaatgggaaccccatccagtcaagtagccgtaaactattcggtaaac |
7829327 |
T |
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| Q |
101 |
aactaggtcctgttgaaaatgttgcattccaaacaataagaattttgagattcttcatcttctcaaaagcagtattagtccattgatctaccacatcatg |
200 |
Q |
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| T |
7829326 |
aactaggtcctgttgaaaatgttgcattccgaacaataagaattttgagattcttcatcttctcaaaagcagtattagtccattgatctaccacatcatg |
7829227 |
T |
|
| Q |
201 |
cataggggggtgaagcattattccttctatttcacaacttccctgtaaaaaacatttggcatagttannnnnnnattaagactaactagagtgcatagca |
300 |
Q |
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| T |
7829226 |
cataggggggtgaagcattattccttcaatttcacaacttccctgtaaaaaacatttggcatagttatttttttattaagactaactagagtgcatagca |
7829127 |
T |
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| Q |
301 |
tcacatgagacctagtcattggcagctaaaatttattaataaaagaaaagaaaacaaagct |
361 |
Q |
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| T |
7829126 |
tcacatgagacctagtcattggcagctaaaatttattaataaaagaaaagaaaacaaagct |
7829066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 7837484 - 7837580
Alignment:
| Q |
76 |
agtagccgtaaactatttggtaaacaactaggtcctgttgaaaatgttgcattccaaacaataagaattttgagattcttcatcttctcaaaagcag |
172 |
Q |
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| T |
7837484 |
agtagccgtaaactattcggcaaataactaggtcctgatgaaaatactgtattcctaacaatcaaaattctgagatttttcatcttcttaaaggcag |
7837580 |
T |
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