View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_high_11 (Length: 367)
Name: NF16626_high_11
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_high_11 |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: scaffold0450 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 9523 - 9229
Alignment:
| Q |
20 |
gaaaaactgaaaggtttgaatatcgtctgttttttcttctttctgcgatttcattgatgacagaaattggaagatccgatgaaaattttgaatttaaagc |
119 |
Q |
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| T |
9523 |
gaaaaactgaaaggtttgaatatcgtctgttttttcttctttctgcgatttcattgacgacagaaattggaagatccgatgcaaattttgaatttaaagc |
9424 |
T |
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| Q |
120 |
tctctgagaaactcctccttccattcctttctcttgtacacttttcagaaacatgcgatgcttctacaagtgttatatgatcatatactgatgcattaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9423 |
tctctgagaaactcctccttccattcctttctcttgtacacttttcagaaacattcgatgcttctacaagtgttatatgatcatatactaatgcattaga |
9324 |
T |
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| Q |
220 |
aacttgacatatattctaaaaatatttggacgaaaaatgaaattcgtaaatttggcgttctaacacttatcacaacactaaatatagagactcta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9323 |
aacttgacatatattctaaaaatatttggacgaaaaatgaaattcgtaactttggcgttctaacacttatcacaacactaaatatagagactcta |
9229 |
T |
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