View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16626_high_12 (Length: 365)

Name: NF16626_high_12
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16626_high_12
NF16626_high_12
[»] chr7 (7 HSPs)
chr7 (16-346)||(44541705-44542035)
chr7 (19-60)||(29060739-29060780)
chr7 (19-60)||(42607088-42607129)
chr7 (16-60)||(24996680-24996724)
chr7 (19-60)||(32871140-32871181)
chr7 (19-60)||(42607812-42607853)
chr7 (16-60)||(24995859-24995903)
[»] chr3 (5 HSPs)
chr3 (19-60)||(33455781-33455822)
chr3 (19-60)||(49161808-49161849)
chr3 (33-62)||(26836351-26836380)
chr3 (20-65)||(41553348-41553393)
chr3 (19-60)||(51421675-51421716)
[»] chr8 (1 HSPs)
chr8 (19-60)||(37562302-37562343)
[»] chr2 (1 HSPs)
chr2 (20-65)||(5005464-5005509)
[»] chr1 (9 HSPs)
chr1 (18-60)||(4640535-4640577)
chr1 (18-60)||(4641761-4641803)
chr1 (19-65)||(11031433-11031479)
chr1 (19-65)||(11032219-11032265)
chr1 (19-65)||(47334900-47334946)
chr1 (16-65)||(36272544-36272593)
chr1 (19-60)||(38931321-38931362)
chr1 (19-60)||(41884229-41884270)
chr1 (19-60)||(48835097-48835138)
[»] chr5 (1 HSPs)
chr5 (19-60)||(4789527-4789568)
[»] chr4 (1 HSPs)
chr4 (19-60)||(25970113-25970154)


Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 44541705 - 44542035
Alignment:
Q  16 aatactttcctatggtcggaaacaattcccctttcccatgctaaatgccatcaatcgcatcatcaaaaacattaagagattcctgtaagccacgggtcag 115  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44541705 aatactttcccatggtcggaaacaattccactttcccatgctaaatgccatcaatcgcatcatcaagaacattaagagattcctgtaagccacgggtcag 44541804  T
Q  116 cagaactaggagcattagcaatcctaacatcagcatgggcataacccatgatgtcaatattgatggttgttccttttgcagcatagtgaaattcactgtt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44541805 cagaactaggagcattagcaatcctaacatcagcatgggcataacccaggatgtcaatattgatggttgttccttttgcagcatagtgaaattcgctgtt 44541904  T
Q  216 tcgttcaaaattgcttctttttgtactgcatcttcatttccaacatagcgtgaaccatcgtttgcatataagtcactgcaaacattgctttcacagtaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44541905 tcgttcaaaattgcttctttttgtactgcatcttcatttccaacatagcgtgaaccatcgtttgcatataagtcactgcaaacattgctttcacagtaat 44542004  T
Q  316 atttcttgaattcttgttctatcagcccttc 346  Q
    |||||||||||||||||||||||||||||||    
T  44542005 atttcttgaattcttgttctatcagcccttc 44542035  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 29060739 - 29060780
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||    
T  29060739 actttcccatggtgggaaacaattcccctttcccatgctaaa 29060780  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 42607129 - 42607088
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||    
T  42607129 actttcccatggtgggaaacaattcccctttcccatgctaaa 42607088  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 24996680 - 24996724
Alignment:
Q  16 aatactttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||    
T  24996680 aatactttcccatggtgggaaacaactcccctttcccatgctaaa 24996724  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 32871140 - 32871181
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||||||||| |||||||| ||||| |||||||||||||    
T  32871140 actttcctatggtgggaaacaactccccattcccatgctaaa 32871181  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 42607812 - 42607853
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||||||| | ||||||||||||||||| ||||||||||    
T  42607812 actttcctatgatgggaaacaattccccttttccatgctaaa 42607853  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 24995903 - 24995859
Alignment:
Q  16 aatactttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    |||||||||| ||||| |||||||| ||||||||||||| |||||    
T  24995903 aatactttcccatggtgggaaacaactcccctttcccattctaaa 24995859  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33455781 - 33455822
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  33455781 actttcctatggtgggaaacaattcccctttcccatgctaaa 33455822  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 49161808 - 49161849
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||| ||||| ||||||||||||||||||||||||||||    
T  49161808 actttcccatggtgggaaacaattcccctttcccatgctaaa 49161849  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 26836380 - 26836351
Alignment:
Q  33 ggaaacaattcccctttcccatgctaaatg 62  Q
    ||||||||||||||||||||||||||||||    
T  26836380 ggaaacaattcccctttcccatgctaaatg 26836351  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 41553348 - 41553393
Alignment:
Q  20 ctttcctatggtcggaaacaattcccctttcccatgctaaatgcca 65  Q
    |||||||||||| ||||| ||||| ||||||||||| |||||||||    
T  41553348 ctttcctatggtgggaaataattcacctttcccatgataaatgcca 41553393  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 51421675 - 51421716
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||| ||||| |||||||||||||||||| |||||||||    
T  51421675 actttcccatggtgggaaacaattcccctttctcatgctaaa 51421716  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 37562343 - 37562302
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  37562343 actttcctatggtgggaaacaattctcctttcccatgctaaa 37562302  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 5005509 - 5005464
Alignment:
Q  20 ctttcctatggtcggaaacaattcccctttcccatgctaaatgcca 65  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||    
T  5005509 ctttcccatgatgggaaacaattcccctttcccatgctaaatgcca 5005464  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 4640577 - 4640535
Alignment:
Q  18 tactttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||    
T  4640577 tactttcccatggtgggaaacaattcccctttaccatgctaaa 4640535  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 4641761 - 4641803
Alignment:
Q  18 tactttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||||  |||| ||||||||||||||||||||||||||||    
T  4641761 tactttcccttggtgggaaacaattcccctttcccatgctaaa 4641803  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 11031479 - 11031433
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaatgcca 65  Q
    ||||||| ||||| |||||| |||||||||||||||| |||||||||    
T  11031479 actttcccatggtgggaaactattcccctttcccatgttaaatgcca 11031433  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 11032219 - 11032265
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaatgcca 65  Q
    ||||||| ||||| |||||| |||||||||||||||| |||||||||    
T  11032219 actttcccatggtgggaaactattcccctttcccatgttaaatgcca 11032265  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 47334900 - 47334946
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaatgcca 65  Q
    ||||||||||||| |||||||| |||| |||||||| ||||||||||    
T  47334900 actttcctatggtgggaaacaactcccttttcccatactaaatgcca 47334946  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 36272544 - 36272593
Alignment:
Q  16 aatactttcctatggtcggaaacaattcccctttcccatgctaaatgcca 65  Q
    |||||||||| ||||| |||||||| | ||| ||||||||||||||||||    
T  36272544 aatactttcccatggtgggaaacaagttcccattcccatgctaaatgcca 36272593  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 38931362 - 38931321
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||| ||||| |||||||||||||||||| |||||||||    
T  38931362 actttcccatggtgggaaacaattcccctttctcatgctaaa 38931321  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 41884229 - 41884270
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||||||||| |||||||||| |||||| ||||||||||    
T  41884229 actttcctatggtgggaaacaatttcccttttccatgctaaa 41884270  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 48835097 - 48835138
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||| ||||| | ||||||||||||||||||||||||||    
T  48835097 actttcccatggtggaaaacaattcccctttcccatgctaaa 48835138  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 4789568 - 4789527
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||| ||||| |||||||| |||||||||||||||||||    
T  4789568 actttcccatggtgggaaacaactcccctttcccatgctaaa 4789527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 25970154 - 25970113
Alignment:
Q  19 actttcctatggtcggaaacaattcccctttcccatgctaaa 60  Q
    ||||||| ||||| |||||||| |||||||||||||||||||    
T  25970154 actttcccatggtgggaaacaactcccctttcccatgctaaa 25970113  T

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