View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16626_high_14 (Length: 356)

Name: NF16626_high_14
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16626_high_14
NF16626_high_14
[»] chr2 (3 HSPs)
chr2 (1-340)||(18914413-18914752)
chr2 (218-340)||(18909665-18909790)
chr2 (198-340)||(18921561-18921706)
[»] scaffold0464 (1 HSPs)
scaffold0464 (217-340)||(7116-7239)
[»] chr3 (2 HSPs)
chr3 (217-340)||(12735691-12735814)
chr3 (262-340)||(32579733-32579811)
[»] chr7 (5 HSPs)
chr7 (267-340)||(19879720-19879793)
chr7 (260-340)||(19778721-19778801)
chr7 (283-340)||(19721196-19721253)
chr7 (262-340)||(19888582-19888660)
chr7 (300-340)||(19357087-19357127)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 18914752 - 18914413
Alignment:
Q  1 tatcaaaacgcattatatttgcatcatacgttaatctaataagaggaattcttgcgtggatatcatttctcattaaaattctaaagtttacctttcccgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18914752 tatcaaaacgcattatatttgcatcatacgttaatctaataagaggaattcttgcgtggatatcatttctcattaaaattctaaagcttacctttcccgt 18914653  T
Q  101 agaaaagagacttgaggactcagaaatccccaaacgtgtagtagggttcaacattttatactttaattacaatttacaacaaaaacatcactaactactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18914652 agaaaagagacttgaggactcagaaatccccaaacgtgtagtagggttcaacattttatacttcaattacaatttacaacaaaaacatcactaactactc 18914553  T
Q  201 atgaattcccctatagcaaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  18914552 atgaattcccctatagcaaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaacttattgcagaaatcctttctcgac 18914453  T
Q  301 ttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18914452 ttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaa 18914413  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 18909790 - 18909665
Alignment:
Q  218 aaagtctccgcattcaaacaactgcgttc---caacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaact 314  Q
    |||||||||||||||||||| | |||||    |||| |||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||    
T  18909790 aaagtctccgcattcaaacagcggcgttgtttcaacatcgctgttaatccttcttgacgaactcatcgcagaaatcctttcacgacttcctgtcaaaact 18909691  T
Q  315 ctgatgcaaatgaaatgcgtttgcaa 340  Q
    ||||||||||||||||||||||||||    
T  18909690 ctgatgcaaatgaaatgcgtttgcaa 18909665  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 340
Target Start/End: Complemental strand, 18921706 - 18921561
Alignment:
Q  198 ctcatgaattcccctatagcaaagtctccgcattcaaacaactgcgtt---ccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatccttt 294  Q
    |||||||||||||||  |||||||||||| |||  ||||| | |||||   ||| |||||||||||||||||||||||||  | ||||||||||||||||    
T  18921706 ctcatgaattcccctccagcaaagtctccacatagaaacagcggcgttgttccagcgtcgctgttaatccttcttgatgagctcatcgcagaaatccttt 18921607  T
Q  295 ctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaa 340  Q
    | || ||||| || ||||||||||||||||||||||||||||||||    
T  18921606 cacgtcttccagtaaaaactctgatgcaaatgaaatgcgtttgcaa 18921561  T

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Target: scaffold0464 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 217 - 340
Target Start/End: Original strand, 7116 - 7239
Alignment:
Q  217 caaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactct 316  Q
    ||||||||||||  ||||||  ||||| | ||||||||||| || |||||||||| ||| |||||| |||||| ||||| ||||||||||||||||||||    
T  7116 caaagtctccgccatcaaactgctgcgctacaacgtcgctgatagtccttcttgacgaacttatcgtagaaattctttcacgacttcctgtcaaaactct 7215  T
Q  317 gatgcaaatgaaatgcgtttgcaa 340  Q
    ||||||| | ||||| || |||||    
T  7216 gatgcaattcaaatgtgtctgcaa 7239  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 217 - 340
Target Start/End: Complemental strand, 12735814 - 12735691
Alignment:
Q  217 caaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactct 316  Q
    |||||||||||| |||| ||  ||||| | |||| |||||| || |||||||||||||| |||||| |||||| ||||| |||||||||||||||||| |    
T  12735814 caaagtctccgccttcatactgctgcgctacaacctcgctgatagtccttcttgatgaacttatcgtagaaattctttcacgacttcctgtcaaaacttt 12735715  T
Q  317 gatgcaaatgaaatgcgtttgcaa 340  Q
    ||||||| | ||||| ||||||||    
T  12735714 gatgcaattcaaatgtgtttgcaa 12735691  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 32579811 - 32579733
Alignment:
Q  262 tccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaa 340  Q
    |||| ||||||||| | ||||  |||||||| || || ||||||||||||||||| |||||| | ||||| ||||||||    
T  32579811 tcctccttgatgaactcatcgtggaaatcctatcacgccttcctgtcaaaactcttatgcaattcaaatgtgtttgcaa 32579733  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 19879793 - 19879720
Alignment:
Q  267 cttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaa 340  Q
    ||||||||| | ||| |||| |||||||| |||||||||||||||||||| |||||| | ||||| ||||||||    
T  19879793 cttgatgaactcatcacagacatcctttcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaa 19879720  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 19778721 - 19778801
Alignment:
Q  260 aatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaa 340  Q
    |||||| ||||||||| | ||| |||| ||||| || |||||||||||||||||||| |||||| | ||||| ||||||||    
T  19778721 aatcctccttgatgaactcatcacagacatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaa 19778801  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 19721196 - 19721253
Alignment:
Q  283 cagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaa 340  Q
    |||||||||| || || |||||| ||||||||||||||||||||||||| || |||||    
T  19721196 cagaaatcctatcacgccttcctttcaaaactctgatgcaaatgaaatgtgtctgcaa 19721253  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 19888660 - 19888582
Alignment:
Q  262 tccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaa 340  Q
    |||| ||||||||| | ||||  || ||||| || |||||||||||||||||||| |||||| | ||||| ||||||||    
T  19888660 tcctccttgatgaactcatcgtggatatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaa 19888582  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 19357087 - 19357127
Alignment:
Q  300 cttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaa 340  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  19357087 cttcccgtcaaaactctgatgcaattcaaatgcgtttgcaa 19357127  T

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