View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16626_high_16 (Length: 298)
Name: NF16626_high_16
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 43806969 - 43806695
Alignment:
| Q |
9 |
agcaaaggaaccagtaaaaacattggcatcacaagaaaaggtatccaattttaaatgaaacgtagttcttacttagaattccagtttagctgcaaaacat |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43806969 |
agcaaaagaaccagtaaaaacattggcatcacaagaaaaggtatccaattttaaatgaaaagtagctcttacttagaattccagtttagctgcaaaacat |
43806870 |
T |
|
| Q |
109 |
ctaagctcacattactcatcaaaacaatccacctccaaaacatgatatatcataccaatgaagaaaacaagcaattctgcgtcacatctccgtcacgtga |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43806869 |
ctaagctcacattactcatcaaaacaatccacctccaaaacatattatatcataccaatgaagaaaacaagcaattctgcgtcacatctccgtcacgtga |
43806770 |
T |
|
| Q |
209 |
tacaacaggcacgtgtaggccaacgtcttgctaaatacaattgtgcagttcttgcctccttgggctgacatcatt |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43806769 |
tacaacaggcacgtgtaggccaacgtcttgctaaatacaattgtgcagttcttgcctccttgggctgacatcatt |
43806695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University