View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16626_high_18 (Length: 277)

Name: NF16626_high_18
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16626_high_18
NF16626_high_18
[»] chr3 (53 HSPs)
chr3 (22-212)||(6945732-6945922)
chr3 (23-258)||(8570334-8570566)
chr3 (15-257)||(8453054-8453293)
chr3 (23-244)||(6840275-6840496)
chr3 (102-244)||(6840627-6840769)
chr3 (19-212)||(6795990-6796180)
chr3 (19-212)||(8470024-8470214)
chr3 (126-260)||(6522968-6523099)
chr3 (19-251)||(6481361-6481590)
chr3 (126-258)||(6841059-6841188)
chr3 (174-260)||(6942352-6942438)
chr3 (23-258)||(6450177-6450409)
chr3 (23-258)||(6730105-6730337)
chr3 (102-260)||(6528475-6528630)
chr3 (103-254)||(6796209-6796360)
chr3 (23-260)||(7586287-7586521)
chr3 (126-244)||(6840924-6841039)
chr3 (21-244)||(6521516-6521733)
chr3 (21-244)||(6734385-6734602)
chr3 (126-244)||(6522023-6522138)
chr3 (126-244)||(6522158-6522273)
chr3 (20-259)||(6932012-6932246)
chr3 (28-212)||(8588276-8588457)
chr3 (104-258)||(6592810-6592961)
chr3 (102-260)||(6734090-6734245)
chr3 (102-260)||(6781418-6781573)
chr3 (126-258)||(6556200-6556329)
chr3 (126-212)||(6521888-6521971)
chr3 (126-212)||(6522293-6522376)
chr3 (126-212)||(6522833-6522916)
chr3 (20-147)||(6486375-6486502)
chr3 (21-212)||(6528262-6528447)
chr3 (21-244)||(6555828-6556045)
chr3 (126-212)||(6522563-6522646)
chr3 (126-244)||(6840789-6840904)
chr3 (50-162)||(4390320-4390432)
chr3 (53-244)||(6781093-6781278)
chr3 (184-258)||(5297166-5297240)
chr3 (184-258)||(6898509-6898583)
chr3 (184-244)||(6521808-6521868)
chr3 (184-244)||(6522483-6522543)
chr3 (184-244)||(6522753-6522813)
chr3 (126-212)||(6556065-6556148)
chr3 (104-258)||(6723536-6723687)
chr3 (104-258)||(6880937-6881088)
chr3 (104-254)||(6915526-6915673)
chr3 (102-176)||(6734315-6734389)
chr3 (102-176)||(6781274-6781348)
chr3 (184-258)||(7748423-7748497)
chr3 (104-258)||(6140707-6140858)
chr3 (108-258)||(6236146-6236293)
chr3 (130-170)||(5248683-5248723)
chr3 (126-212)||(6840516-6840599)
[»] scaffold1643 (1 HSPs)
scaffold1643 (50-258)||(588-796)
[»] scaffold0958 (1 HSPs)
scaffold0958 (23-211)||(1171-1357)
[»] scaffold0425 (3 HSPs)
scaffold0425 (102-260)||(9224-9379)
scaffold0425 (21-212)||(8876-9061)
scaffold0425 (102-208)||(9089-9192)
[»] chr7 (1 HSPs)
chr7 (19-211)||(6574701-6574890)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 6945922 - 6945732
Alignment:
Q  22 gaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctg 121  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||| |||   |||  ||||||||||||||||||||||||||    
T  6945922 gaagagttttacaacaatagtacaacaaatgttccgttcaggtcccttgaagttttgaaattggagcatatggtcaattgggaggaatggttttgtcctg 6945823  T
Q  122 aagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6945822 aaaggtttcctttgcttaaagagcttactataagaaattgtcccaaattgaaaagggccttgctgcctcaacaccttccttctttacaaaa 6945732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 8570334 - 8570566
Alignment:
Q  23 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 122  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||   |||||||||||||||||||||||||||||  |||    
T  8570334 aagagttttacggcaatagttcaacaattattccgttcaggtcccttgaagttttggaatttgcatggatgaacaattgggaggaatggttttgtattga 8570433  T
Q  123 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 222  Q
    ||||||||||||||||||| ||||| |||||||| |||||  || ||| |||||||||   ||||||| ||||||||||||||||||||| ||| ||||     
T  8570434 agggtttcctttgcttaaaaagctttctataagatattgtcacagattgaaaagggcc---ctgcctcgacaccttccttctttacaaaaactggagatc 8570530  T
Q  223 agtgattgcaacaagttggaggcatcaattcccaag 258  Q
    ||||||||||| ||||||||||| ||||||||||||    
T  8570531 agtgattgcaagaagttggaggcttcaattcccaag 8570566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 8453293 - 8453054
Alignment:
Q  15 cataggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttt 114  Q
    |||||||||||||||||||| || |||||||| |||||| | ||||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||     
T  8453293 cataggtgaagagttttacgacagtagttcaataaatgtgctgttcaggtctcttgaagttttgaaatttgagaagatgaacaattgggaggaatggttg 8453194  T
Q  115 tgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagc 214  Q
    |||| ||||||||||||||||||||||||||||  ||||||| | ||| ||||||| |||| | ||   |||||||||||||||||||||||||||||      
T  8453193 tgtcttgaagggtttcctttgcttaaagagctttatataagagaatgtcccaaattgaaaatgtcc---ctgcctcaacaccttccttctttacaaaaat 8453097  T
Q  215 tgaagattagtgattgcaacaagttggaggcatcaattcccaa 257  Q
    ||   |||| ||||||||| | |||||| ||||||||||||||    
T  8453096 tgttcattaatgattgcaagatgttggaagcatcaattcccaa 8453054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 6840275 - 6840496
Alignment:
Q  23 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 122  Q
    |||||||||||| |||   ||| |||| |||||| || ||||| ||||||||||||| |||||||  |||||||||||||||| |||||||||||| |||    
T  6840275 aagagttttacgacaacgattcgacaattgttccatttaggtcgcttgaagttttgaaatttgagaagatgaacaattgggagaaatggttttgtcttga 6840374  T
Q  123 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 222  Q
    ||||||||||||||||||| || || |||||||||| ||| ||||||| |||| |||  |||||||| |||||||| ||||||||||||||||| |||||    
T  6840375 agggtttcctttgcttaaaaagatttctataagaaaatgtcccaaattgaaaaaggcagtgctgcctaaacaccttacttctttacaaaagctggagatt 6840474  T
Q  223 agtgattgcaacaagttggagg 244  Q
    ||| ||||||||||||||||||    
T  6840475 agttattgcaacaagttggagg 6840496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 6840627 - 6840769
Alignment:
Q  102 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 201  Q
    |||| |||||||||||| ||||||| ||||||||||||||||| || |||||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  6840627 ggagaaatggttttgtcttgaagggattcctttgcttaaagagatttctataagaaattgccccaaattaaaaagggccttgctacctcaacaccttcct 6840726  T
Q  202 tctttacaaaagctgaagattagtgattgcaacaagttggagg 244  Q
    ||||||||||| ||||||||| |||||||||||||||||||||    
T  6840727 tctttacaaaaactgaagatttgtgattgcaacaagttggagg 6840769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 6795990 - 6796180
Alignment:
Q  19 ggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtc 118  Q
    |||||||| ||||||  ||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||    
T  6795990 ggtgaagaattttacaacaatagttcaacaaatgtttcgttcaggtcccttgaggttttgaaatttgaggagatggacaattgggaggaatggttttgtc 6796089  T
Q  119 ctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
     ||||||||||||||||||||||||||||  ||||| || ||||  | |||| ||||||||    | ||||||| |||||||||||||||||||    
T  6796090 ttgaagggtttcctttgcttaaagagctttatataacaagttgtcacgaattgaaaagggc---tcagcctcaaaaccttccttctttacaaaa 6796180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 8470214 - 8470024
Alignment:
Q  19 ggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtc 118  Q
    |||||||||||| | ||||| | |||||||||||||||||||  ||||||||||||||||| ||||| |  |||||||| ||||||||||||||| ||||    
T  8470214 ggtgaagagtttcatggcaacaattcaacaaatgttccgttcttgtcccttgaagttttgaaatttgtgaagatgaacagttgggaggaatggttgtgtc 8470115  T
Q  119 ctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
     |||||||||||||||||||||||||||| |||||| ||  ||| || |||| | ||| || |   ||||||||||||||||||||||||||||    
T  8470114 ttgaagggtttcctttgcttaaagagctttctataaaaagctgtcccgaattgagaagcgcat---tgcctcaacaccttccttctttacaaaa 8470024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 126 - 260
Target Start/End: Original strand, 6522968 - 6523099
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 225  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||||||||||||    
T  6522968 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaaactgaagattagt 6523064  T
Q  226 gattgcaacaagttggaggcatcaattcccaagtg 260  Q
     ||||||||||| ||||||||||||||||||||||    
T  6523065 aattgcaacaagatggaggcatcaattcccaagtg 6523099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 6481361 - 6481590
Alignment:
Q  19 ggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtc 118  Q
    ||||||||||| || || |||| ||||| || || | | |||||||| ||||||||||||  |||| || ||||| | |||| |||||||||||| ||||    
T  6481361 ggtgaagagttatatggaaataattcaaaaattgatgcattcaggtctcttgaagttttggaatttcagcggatggaaaatttggaggaatggttatgtc 6481460  T
Q  119 ctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaa 218  Q
     |||||||||||  | |||||||||||||||||||| | ||||| ||||||| |||||||||   || ||||||||||||||||||||||| ||  ||      
T  6481461 atgaagggtttctgtcgcttaaagagcttactataaaagattgtcccaaattgaaaagggcc---cttcctcaacaccttccttctttacagaaattgtc 6481557  T
Q  219 gattagtgattgcaacaagttggaggcatcaat 251  Q
    ||||| | ||||||||||||||||||| |||||    
T  6481558 gattattaattgcaacaagttggaggcttcaat 6481590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 6841059 - 6841188
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 225  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||| ||||| |     
T  6841059 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaaactgcagatttgg 6841155  T
Q  226 gattgcaacaagttggaggcatcaattcccaag 258  Q
    |||||||||||| ||||||||||||||||||||    
T  6841156 gattgcaacaagatggaggcatcaattcccaag 6841188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 6942438 - 6942352
Alignment:
Q  174 aagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaagtg 260  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||    
T  6942438 aagggccttgctgcctcaacaccttccttctttacaaaaactgaagattggttattgcaacaagatggaggcatcaattcccaagtg 6942352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 6450177 - 6450409
Alignment:
Q  23 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 122  Q
    ||||||| || || |||| ||||| || |||||| ||||| || |||||||| |||| |||||||  | || | ||||||||||||||||| | |  |||    
T  6450177 aagagttctatggaaataattcaataattgttccattcagatctcttgaagtattgaaatttgagcagttggagaattgggaggaatggttatttattga 6450276  T
Q  123 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 222  Q
    || ||||||| | ||||||||||||   |||||||||||| ||||| | |||||||||   |||||||||||||||||||||||| ||||  ||||||||    
T  6450277 agagtttcctctacttaaagagcttgaaataagaaattgtcccaaactgaaaagggcc---ctgcctcaacaccttccttctttagaaaaattgaagatt 6450373  T
Q  223 agtgattgcaacaagttggaggcatcaattcccaag 258  Q
      |  ||||||  |||||||||||||||||||||||    
T  6450374 gtttgttgcaatgagttggaggcatcaattcccaag 6450409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 6730105 - 6730337
Alignment:
Q  23 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 122  Q
    ||||||| || || |||| ||||| || |||||| |||||||| |||||||| |||| |||||||    || | ||||||||||||||||| | |  |||    
T  6730105 aagagttctatggaaataattcaataattgttccattcaggtctcttgaagtattgaaatttgagcaattggagaattgggaggaatggttatttattga 6730204  T
Q  123 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 222  Q
    || ||||||| | ||||||||||||   |||||||||||| ||||| | |||||||||   |||||||||||||||||||||||| ||||  ||||||||    
T  6730205 agagtttcctctacttaaagagcttgaaataagaaattgtcccaaactgaaaagggcc---ctgcctcaacaccttccttctttagaaaaattgaagatt 6730301  T
Q  223 agtgattgcaacaagttggaggcatcaattcccaag 258  Q
      |  ||||||  |||||||||||||||||||||||    
T  6730302 gtttgttgcaaagagttggaggcatcaattcccaag 6730337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 102 - 260
Target Start/End: Original strand, 6528475 - 6528630
Alignment:
Q  102 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 201  Q
    |||||||||||| || | || || ||||||||||||||||||| || |||||| || |||| || |||| ||||||||    ||||||||||||||||||    
T  6528475 ggaggaatggttatgccttggagagtttcctttgcttaaagagatttctataacaagttgtcccgaattgaaaagggct---ctgcctcaacaccttcct 6528571  T
Q  202 tctttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaagtg 260  Q
    ||||||||||| ||| |||||| |||||||| |||| |||||||| |||||||||||||    
T  6528572 tctttacaaaaactggagattattgattgcagcaagatggaggcaacaattcccaagtg 6528630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 103 - 254
Target Start/End: Original strand, 6796209 - 6796360
Alignment:
Q  103 gaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcctt 202  Q
    ||||||||||| || |||| || ||||||||||||||||||| || || |||    ||||| ||| |||||||||| |||||| ||||||||||||||||    
T  6796209 gaggaatggttatgccctggagagtttcctttgcttaaagagatttctgtaaatgtttgttacaacttaaaaagggtcttgcttcctcaacaccttcctt 6796308  T
Q  203 ctttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcc 254  Q
    ||||||| ||  |||||||| |||||||| || ||||||| |||||||||||    
T  6796309 ctttacagaaaatgaagattggtgattgctacgagttggaagcatcaattcc 6796360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 260
Target Start/End: Complemental strand, 7586521 - 7586287
Alignment:
Q  23 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 122  Q
    |||| ||||| ||||||| ||| ||||||||||| ||||| ||||||||| || ||   |||||   ||||    | |||||||||||||    || |||    
T  7586521 aagaattttatggcaataattccacaaatgttccattcagatcccttgaaattctgcattttgattcgatgtcggaatgggaggaatggtcacatcttga 7586422  T
Q  123 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 222  Q
    ||||||||||||||||||||||||| |||||| ||| ||| |||| || ||||||||    |||||||||||||||||||||||||| || ||| |||||    
T  7586421 agggtttcctttgcttaaagagctttctataaaaaaatgtcccaagttgaaaagggct---ctgcctcaacaccttccttctttacagaaactggagatt 7586325  T
Q  223 agtgattgcaacaagttggaggcatcaattcccaagtg 260  Q
    |  |||||||| |||||||| |||| |||||| |||||    
T  7586324 aaagattgcaagaagttggaagcattaattccgaagtg 7586287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 6840924 - 6841039
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 225  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||  ||||| |     
T  6840924 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaatctagagatttgg 6841020  T
Q  226 gattgcaacaagttggagg 244  Q
    |||||||||||||||||||    
T  6841021 gattgcaacaagttggagg 6841039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 6521516 - 6521733
Alignment:
Q  21 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 120  Q
    |||||| ||||| ||||||| |||||||| |||||| |||| ||||||| ||  ||||| |||| |||  |||  ||| |||||||||||| | |||       
T  6521516 tgaagatttttatggcaataattcaacaattgttccattcaagtcccttcaatatttgagatttcaggatatggtcaactgggaggaatggatatgt--- 6521612  T
Q  121 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaaga 220  Q
    | | |||||||| ||||||||||||||  ||||| ||||||| | ||||| |||||  ||   ||||||||||||||| |||||||||||||  ||||||    
T  6521613 gtaaggtttcctctgcttaaagagctttatataaaaaattgtcctaaattgaaaagcacc---ctgcctcaacacctttcttctttacaaaaattgaaga 6521709  T
Q  221 ttagtgattgcaacaagttggagg 244  Q
    | |||||||||||| |||||||||    
T  6521710 tcagtgattgcaacgagttggagg 6521733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 6734602 - 6734385
Alignment:
Q  21 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 120  Q
    |||||||||||| ||||||| |||||||| |||||| |||| ||||||||||  ||||| ||||||||  |||  ||| |||||||||||| | ||   |    
T  6734602 tgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatg---t 6734506  T
Q  121 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaaga 220  Q
    | | ||||||||||||||| ||||||| |||||| ||||||| | ||| | ||| |  ||   ||||||||||| |||||||||||||||||  |||| |    
T  6734505 gtaaggtttcctttgcttatagagctttctataacaaattgtcctaaactgaaaggcacc---ctgcctcaacatcttccttctttacaaaaattgaata 6734409  T
Q  221 ttagtgattgcaacaagttggagg 244  Q
    |||||| ||||||  |||||||||    
T  6734408 ttagtggttgcaaagagttggagg 6734385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 6522023 - 6522138
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 225  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||| |||||||||||||||||||||||| ||| ||||| |     
T  6522023 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcatcaacaccttccttctttacaaaaactggagattcgg 6522119  T
Q  226 gattgcaacaagttggagg 244  Q
     ||||||||||||||||||    
T  6522120 aattgcaacaagttggagg 6522138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 6522158 - 6522273
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 225  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||| |||||||||||||||||||||||| ||| ||||| |     
T  6522158 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcatcaacaccttccttctttacaaaatctggagattcgg 6522254  T
Q  226 gattgcaacaagttggagg 244  Q
     ||||||||||||||||||    
T  6522255 aattgcaacaagttggagg 6522273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 6932246 - 6932012
Alignment:
Q  20 gtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcc 119  Q
    ||||||| ||||||| ||||| |  ||||| | |||| || ||||||||||||||||||||||||||   |||| |   || |||||||||||| ||||     
T  6932246 gtgaagaattttacgacaataat--aacaatttttccatttaggtcccttgaagttttgatatttgactagatgcattgtttggaggaatggttatgtct 6932149  T
Q  120 tgaagggtttcctttgcttaaagagctt-actataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaa 218  Q
    ||| |||||||||||||||| ||||||| |||  ||||   ||   | |||| ||||||||    || |||||||||||||||||||||||||| ||| |    
T  6932148 tgatgggtttcctttgcttagagagctttactc-aagaggatggctcgaattgaaaagggct---cttcctcaacaccttccttctttacaaaaactgga 6932053  T
Q  219 gattagtgattgcaacaagttggaggcatcaattcccaagt 259  Q
    ||||||||||||| ||||||| ||||| |||||||| ||||    
T  6932052 gattagtgattgccacaagtttgaggcttcaattcctaagt 6932012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 8588457 - 8588276
Alignment:
Q  28 ttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggt 127  Q
    |||||||| ||||  ||||||| |||||| |||||||| ||||||||||||  |||| |  ||||| ||||||||||||||||| | || | | ||||||    
T  8588457 ttttacggaaataactcaacaattgttccattcaggtctcttgaagttttggaatttaaacggatggacaattgggaggaatggatatgccttcaagggt 8588358  T
Q  128 ttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
    |||||||||||||| ||||   ||||||  | ||| |  |||| |||||||| |   ||||||||||||||||||||||||||||    
T  8588357 ttcctttgcttaaaaagctatttataagtgaatgtcctgaattgaaaagggctt---tgcctcaacaccttccttctttacaaaa 8588276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 6592810 - 6592961
Alignment:
Q  104 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 203  Q
    |||||||||| |||| |||||| || ||||||||| ||||||||  ||||| | ||||| |||| || ||||| |||   ||||||||||||||||||||    
T  6592810 aggaatggttatgtcttgaaggtttccctttgcttcaagagctttgtataaaacattgtcccaagttgaaaagagcc---ctgcctcaacaccttccttc 6592906  T
Q  204 tttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaag 258  Q
    ||| |||||  || |||||| ||||||| |  |||||||||| ||||||||||||    
T  6592907 tttgcaaaaattggagattactgattgccaagagttggaggcttcaattcccaag 6592961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 260
Target Start/End: Complemental strand, 6734245 - 6734090
Alignment:
Q  102 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 201  Q
    |||||||||||| || | || || ||||||||||||||||||  || |||||   || |||||  |||| ||||||||    ||||| ||||||||||||    
T  6734245 ggaggaatggttatgccttggagagtttcctttgcttaaagatatttctatattcaaatgttctgaattgaaaagggct---ctgccacaacaccttcct 6734149  T
Q  202 tctttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaagtg 260  Q
    |||||||| || ||| ||||||| ||||||||||||||||| ||||||||||| |||||    
T  6734148 tctttacagaaactggagattagagattgcaacaagttggaagcatcaattcctaagtg 6734090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 260
Target Start/End: Original strand, 6781418 - 6781573
Alignment:
Q  102 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 201  Q
    |||||||||||| || | || || ||||||||||||||||||  || |||||   || |||||  |||| ||||||||    ||||| ||||||||||||    
T  6781418 ggaggaatggttatgccttggagagtttcctttgcttaaagatatttctatattcaaatgttctgaattgaaaagggct---ctgccacaacaccttcct 6781514  T
Q  202 tctttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaagtg 260  Q
    |||||||| || ||| ||||||| ||||||||||||||||| ||||||||||| |||||    
T  6781515 tctttacagaaactggagattagagattgcaacaagttggaagcatcaattcctaagtg 6781573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 6556200 - 6556329
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 225  Q
    ||||||||||||||||| | || ||||||||||||||  | |||| ||||||||    ||||||||||||||||||||||||||||| |||    |   |    
T  6556200 gtttcctttgcttaaagtgttttctataagaaattgtctcgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaaactgggtgtattt 6556296  T
Q  226 gattgcaacaagttggaggcatcaattcccaag 258  Q
    ||||||||| |||||||||||||||||||||||    
T  6556297 gattgcaacgagttggaggcatcaattcccaag 6556329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 6521888 - 6521971
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6521888 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6521971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 6522293 - 6522376
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6522293 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6522376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 6522833 - 6522916
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6522833 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6522916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 6486375 - 6486502
Alignment:
Q  20 gtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcc 119  Q
    ||||||| ||||||| ||||| |||||||| | |||| || ||||||||||||||||||||||||||   |||| |   || |||||| ||||| ||||     
T  6486375 gtgaagaattttacgacaataattcaacaatttttccatttaggtcccttgaagttttgatatttgactagatgcattgtttggaggactggttatgtct 6486474  T
Q  120 tgaagggtttcctttgcttaaagagctt 147  Q
    ||| |||||||||||||| |||||||||    
T  6486475 tgatgggtttcctttgctgaaagagctt 6486502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 6528262 - 6528447
Alignment:
Q  21 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 120  Q
    |||||| ||||| | ||||| |||||||| |||||| |||| ||||||| || ||| ||||||||||   |||   || |||||| ||||| | ||||      
T  6528262 tgaagatttttatgacaataattcaacaattgttccattcaagtcccttcaattttcgatatttgagaatatggtgaactgggagaaatggatatgtct- 6528360  T
Q  121 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
      | ||||||||||||||||||||||| |||||||||||||| | ||||| |||||  |||   |||||||||| |||||||||||||||||    
T  6528361 --aaggtttcctttgcttaaagagctttctataagaaattgtcctaaattgaaaagcacct---tgcctcaacagcttccttctttacaaaa 6528447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 6555828 - 6556045
Alignment:
Q  21 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 120  Q
    |||||||||||| ||||||| |||||||| |||||| |||| ||||||||||  ||||| ||||||||  |||  ||| |||||||||||| | ||   |    
T  6555828 tgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatg---t 6555924  T
Q  121 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaaga 220  Q
    | | |||||||| ||||||||||||||  ||||  ||||||| | ||||| ||||| |   |  |||||||||| ||||| |||||||||||  ||  ||    
T  6555925 gtaaggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagag---tattgcctcaacatcttccatctttacaaaatttgtgga 6556021  T
Q  221 ttagtgattgcaacaagttggagg 244  Q
    | | ||||||||||| ||||||||    
T  6556022 tcaatgattgcaacatgttggagg 6556045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 6522563 - 6522646
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
    ||||||||||||||||||| || |||||| ||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6522563 gtttcctttgcttaaagagatttctataacaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6522646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 6840789 - 6840904
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 225  Q
    ||||||||||||||||||| || |||||    ||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||  ||||| |     
T  6840789 gtttcctttgcttaaagagatttctatatccgattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaatctagagatttgg 6840885  T
Q  226 gattgcaacaagttggagg 244  Q
    |||||||||||||||||||    
T  6840886 gattgcaacaagttggagg 6840904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 4390320 - 4390432
Alignment:
Q  50 atgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttac 149  Q
    ||||||| ||||||| ||||||| |||||  ||||||||  |||  ||||||| |||||||||| |||  |||||| || |||||||||||||||||| |    
T  4390320 atgttccattcaggttccttgaaattttgcgatttgaggacatgtccaattggaaggaatggttatgtgttgaaggtttccctttgcttaaagagctttc 4390419  T
Q  150 tataagaaattgt 162  Q
    |||| | ||||||    
T  4390420 tatacgtaattgt 4390432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 6781093 - 6781278
Alignment:
Q  53 ttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactat 152  Q
    |||| |||| ||||||||||  ||||| ||||||||  |||  ||| |||||||||||| | |||   | | ||||||||||||||| ||||||| ||||    
T  6781093 ttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgt---gtaaggtttcctttgcttatagagctttctat 6781189  T
Q  153 aagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggagg 244  Q
    || ||||||| | ||| | ||| |  ||   ||||||||||| |||||||||||||||||  |||| ||||||| ||||||  |||||||||    
T  6781190 aacaaattgtcctaaactgaaaggcacc---ctgcctcaacatcttccttctttacaaaaattgaatattagtggttgcaaagagttggagg 6781278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 5297240 - 5297166
Alignment:
Q  184 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaag 258  Q
    ||||||||||| ||||||||||| |||||  ||||||||||||||||| |  |||||||||| || |||||||||    
T  5297240 ctgcctcaacatcttccttctttgcaaaaattgaagattagtgattgccaagagttggaggcttcgattcccaag 5297166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 6898583 - 6898509
Alignment:
Q  184 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaag 258  Q
    ||||||||||||||||||||||| |||||| |||| |||| ||||||| |  ||||| |||| ||||||||||||    
T  6898583 ctgcctcaacaccttccttctttgcaaaagttgaaaattattgattgccaagagttgcaggcttcaattcccaag 6898509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 6521808 - 6521868
Alignment:
Q  184 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggagg 244  Q
    |||| |||||||||||||||||||||||| ||| ||||| |  ||||||||||||||||||    
T  6521808 ctgcatcaacaccttccttctttacaaaaactggagattcggaattgcaacaagttggagg 6521868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 6522483 - 6522543
Alignment:
Q  184 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggagg 244  Q
    |||| |||||||||||||||||||||||| ||| ||||| |  ||||||||||||||||||    
T  6522483 ctgcatcaacaccttccttctttacaaaaactggagattcggaattgcaacaagttggagg 6522543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 6522753 - 6522813
Alignment:
Q  184 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggagg 244  Q
    |||| |||||||||||||||||||||||| ||| ||||| |  ||||||||||||||||||    
T  6522753 ctgcatcaacaccttccttctttacaaaaactggagattcggaattgcaacaagttggagg 6522813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 6556065 - 6556148
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
    ||||||||||||||||||| ||   |||||||||||| || |||| ||||||||    || ||||||||||||||||||||||||||    
T  6556065 gtttcctttgcttaaagagtttttaataagaaattgtcccgaattgaaaagggc---tcttcctcaacaccttccttctttacaaaa 6556148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 6723536 - 6723687
Alignment:
Q  104 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 203  Q
    |||||||||| |||| |||||| || ||||||||  ||||||||  ||||| | ||||| |||| || |||||  ||   ||||||||||||||||||||    
T  6723536 aggaatggttatgtcttgaaggtttccctttgctacaagagctttgtataaaacattgtcccaagttgaaaagttcc---ctgcctcaacaccttccttc 6723632  T
Q  204 tttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaag 258  Q
     || |||||  || |||||| ||||||| |  || ||||||| ||||||||||||    
T  6723633 attgcaaaaattggagattattgattgccaagagctggaggcttcaattcccaag 6723687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 6881088 - 6880937
Alignment:
Q  104 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 203  Q
    |||||||||| |||| |||||| || ||||||||| || |||||  ||||| | ||||| |||| || ||||| |||   || ||||||||||| |||||    
T  6881088 aggaatggttatgtcttgaaggtttccctttgcttcaaaagctttgtataaaacattgtcccaagttgaaaagtgcc---cttcctcaacacctcccttc 6880992  T
Q  204 tttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaag 258  Q
    ||| |||||  || |||||| ||||||| |  |||||| ||| ||||||||||||    
T  6880991 tttgcaaaaattggagattattgattgccaagagttggcggcttcaattcccaag 6880937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 6915673 - 6915526
Alignment:
Q  104 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 203  Q
    |||||||||| |||| |||| | || ||||||||| ||||||||  ||||| | ||||| |||| || |||||  ||   ||||||||||||||||||||    
T  6915673 aggaatggttatgtcttgaatgtttccctttgcttcaagagctttgtataaaacattgtcccaagttgaaaagttcc---ctgcctcaacaccttccttc 6915577  T
Q  204 tttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcc 254  Q
    ||| |||||  || |||||| ||||||| |  |||||| ||| ||||||||    
T  6915576 tttgcaaaaattggagattattgattgccaagagttggcggcttcaattcc 6915526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 6734389 - 6734315
Alignment:
Q  102 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaag 176  Q
    |||||||||||| |||| ||||||||||| ||  ||||||||||||  ||||||  ||||||||||||| |||||    
T  6734389 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttatataagtcattgttccaaattcaaaag 6734315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 6781274 - 6781348
Alignment:
Q  102 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaag 176  Q
    |||||||||||| |||| ||||||||||| ||  ||||||||||||  ||||||  ||||||||||||| |||||    
T  6781274 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttatataagtcattgttccaaattcaaaag 6781348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 7748497 - 7748423
Alignment:
Q  184 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaag 258  Q
    ||||||||||||||||||||||| |||||  || |||||| ||||||| |  ||||| |||| ||||||||||||    
T  7748497 ctgcctcaacaccttccttctttgcaaaaattggagattattgattgccaagagttgcaggcttcaattcccaag 7748423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 6140858 - 6140707
Alignment:
Q  104 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 203  Q
    |||||||||| || | |||||| || ||||||||| ||||||||  | ||| | | ||| |||| || ||||| |||   |||||||| || |||||||     
T  6140858 aggaatggttatgccttgaaggtttccctttgcttcaagagctttgtctaaaacaatgtcccaagttgaaaagtgcc---ctgcctcatcatcttccttg 6140762  T
Q  204 tttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaag 258  Q
    ||| |||||| || |||||| ||||||| |  |||||||||| ||||||||||||    
T  6140761 tttgcaaaagttggagattattgattgcgaagagttggaggcttcaattcccaag 6140707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 258
Target Start/End: Complemental strand, 6236293 - 6236146
Alignment:
Q  108 atggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttcttta 207  Q
    |||||| |||| || ||| || ||||| ||||||||||||  ||||| | ||||| |||| || ||||| | |   ||||||||| ||||||||| |||     
T  6236293 atggttatgtcgtggaggtttcccttttcttaaagagctttgtataaaacattgtcccaagttgaaaagtgac---ctgcctcaataccttccttgtttg 6236197  T
Q  208 caaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaag 258  Q
    |||||  || |||||| ||||||| |  |||||||||| ||||||||||||    
T  6236196 caaaaattggagattattgattgccaagagttggaggcgtcaattcccaag 6236146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 5248723 - 5248683
Alignment:
Q  130 cctttgcttaaagagcttactataagaaattgttccaaatt 170  Q
    |||||||||||| ||||| |||||||||||||| |||||||    
T  5248723 cctttgcttaaacagctttctataagaaattgtcccaaatt 5248683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 6840516 - 6840599
Alignment:
Q  126 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
    ||||||||||||||||||| ||  ||||    ||||| ||||||| ||||||||    ||||| |||||||||||||||||||||||    
T  6840516 gtttcctttgcttaaagagatttatatattcgattgtcccaaattgaaaagggct---ctgccacaacaccttccttctttacaaaa 6840599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 50 - 258
Target Start/End: Complemental strand, 796 - 588
Alignment:
Q  50 atgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttac 149  Q
    |||||||||||  ||||||||||||||||| |||||||  | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  796 atgttccgttcttgtcccttgaagttttgaaatttgagaagttgaacaattgggaggaatggttgtgtcctgaagggtttcctttgcttaaagagcttac 697  T
Q  150 tataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggaggcatca 249  Q
    ||||||||| ||| |||||||| ||||||||   ||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||| |||||||||||    
T  696 tataagaaagtgtcccaaattagaaagggccactctgcctcaacaccttccttttttacaaaaactgaatattactgattgcaacaagatggaggcatca 597  T
Q  250 attcccaag 258  Q
    |||||||||    
T  596 attcccaag 588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 1171 - 1357
Alignment:
Q  23 aagagttttacggcaatagttcaacaaatgttccgttcaggtcc-cttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctg 121  Q
    |||||||||| || |||| |||||||| | |||||||||||| | ||||||||||||  ||||||| |||||      ||||| ||||||| ||||| ||    
T  1171 aagagttttatggaaataattcaacaattattccgttcaggttctcttgaagttttggaatttgagtggatgctttgctgggaagaatggtattgtcttg 1270  T
Q  122 aagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaa 211  Q
    |||||||||||||||||||| | ||| |||||||| |||||  || ||| |||||||||   || |||| ||||||||||||||||||||    
T  1271 aagggtttcctttgcttaaaaatctttctataagatattgtcgcatattgaaaagggcc---ctacctcgacaccttccttctttacaaa 1357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 260
Target Start/End: Original strand, 9224 - 9379
Alignment:
Q  102 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 201  Q
    |||||||||||| || | || || ||||||||||||||| ||| || |||||   |||||| || |||| ||||||||    ||||| ||||||||||||    
T  9224 ggaggaatggttatgccttggagagtttcctttgcttaacgagttttctatatccaattgtcccgaattgaaaagggct---ctgccacaacaccttcct 9320  T
Q  202 tctttacaaaagctgaagattagtgattgcaacaagttggaggcatcaattcccaagtg 260  Q
    |||||||||||  ||   |||| |||||||||||||||||| |||||||||||||||||    
T  9321 tctttacaaaaattgttcattaatgattgcaacaagttggaagcatcaattcccaagtg 9379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 8876 - 9061
Alignment:
Q  21 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 120  Q
    |||||| ||||| ||||||| |||||||| |||||| |||| ||||||||||  ||||| ||||| ||  |||  ||| |||||||||||| | ||   |    
T  8876 tgaagaattttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgtggatatggtcaactgggaggaatggatatg---t 8972  T
Q  121 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 212  Q
    | | |||||||| ||||||||||||||  ||||  ||||||| | ||||| |||||  ||   ||||||||||| |||||||||||||||||    
T  8973 gtaaggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcacc---ctgcctcaacatcttccttctttacaaaa 9061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 9089 - 9192
Alignment:
Q  102 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 201  Q
    |||||||||||| |||| ||||||||||| ||  |||||||||||| ||||| |  ||||||| ||||| |||||||   |  |||||||||| ||||||    
T  9089 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttctatatggtattgttctaaattcaaaaggg---tattgcctcaacatcttcct 9185  T
Q  202 tctttac 208  Q
    |||||||    
T  9186 tctttac 9192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 6574701 - 6574890
Alignment:
Q  19 ggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtc 118  Q
    ||||||||||| |||||| || ||||||||   ||||||||||||||||||||| |||||  ||||| |   |||  | | ||| ||||||||||||  |    
T  6574701 ggtgaagagttctacggcgattgttcaacattagttccgttcaggtcccttgaatttttggaatttgggaatatgcccgaatggaaggaatggttttaac 6574800  T
Q  119 ctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaa 211  Q
     |||| ||||||| ||||| |||||||||  ||||    ||||| ||||||| ||||||   || ||||||||| |||||| |||||| ||||    
T  6574801 ttgaacggtttcccttgctcaaagagctttatatagaccattgtcccaaattgaaaagg---ttcctgcctcaaaaccttctttctttgcaaa 6574890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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