View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16626_high_19 (Length: 275)
Name: NF16626_high_19
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16626_high_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 2151882 - 2152141
Alignment:
| Q |
16 |
atatttcactattttgcatcagcgtaatattaacgaatgtctgtgtaaaacttgtttgcacaactattgagttatcaaactcttcttctcaagaaaaggc |
115 |
Q |
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| T |
2151882 |
atatttcattattttgcatcagcgtaatataaacgaatgtctgtgtaaaacttgtttgcacaattattgagttatcaaactcttcttctcaagaaaaggc |
2151981 |
T |
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| Q |
116 |
aagaccaatttcatttaatgtaaaactaaccttgttacgttccgcaaaagctttcatcaatgatccataagcctgcattgatcagtcttttgttagagta |
215 |
Q |
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| T |
2151982 |
aagaccaatttcatttaatgtaaaactaaccttgttacgttccgcaaaagctttcatcaatgatccataagcctgcattgatcagtcttttgttagagta |
2152081 |
T |
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| Q |
216 |
agcagaaagcacatgaaaatatagctacccattcagaaggaaatcatttagaaactagcc |
275 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2152082 |
agcagaaaacacatgaaaatatagctacccattcagaaggaaatcatttagaaactagcc |
2152141 |
T |
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