View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16626_high_20 (Length: 274)

Name: NF16626_high_20
Description: NF16626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16626_high_20
NF16626_high_20
[»] chr6 (14 HSPs)
chr6 (1-153)||(29845973-29846125)
chr6 (1-153)||(29843496-29843648)
chr6 (1-117)||(29826493-29826609)
chr6 (154-229)||(29845872-29845947)
chr6 (154-229)||(29843395-29843470)
chr6 (154-229)||(29826685-29826760)
chr6 (224-274)||(28150730-28150781)
chr6 (229-274)||(29827549-29827595)
chr6 (225-274)||(29842565-29842615)
chr6 (229-274)||(28097025-28097071)
chr6 (37-95)||(28243341-28243399)
chr6 (37-86)||(28150445-28150494)
chr6 (42-118)||(28181668-28181744)
chr6 (37-101)||(28326024-28326088)
[»] scaffold0237 (2 HSPs)
scaffold0237 (1-153)||(2178-2330)
scaffold0237 (154-229)||(2077-2152)
[»] chr5 (1 HSPs)
chr5 (186-229)||(17790839-17790882)
[»] scaffold0038 (2 HSPs)
scaffold0038 (37-95)||(43503-43561)
scaffold0038 (37-101)||(117339-117403)
[»] chr2 (1 HSPs)
chr2 (231-270)||(3281218-3281258)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 29846125 - 29845973
Alignment:
Q  1 ataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846125 ataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaa 29846026  T
Q  101 agaagtttccaaaaagatttacagttgcggattaccctgttggaaccgaatat 153  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29846025 agaagtttccaaaaagatttaccgttgcggattaccctgttggaaccgaatat 29845973  T

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Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 29843648 - 29843496
Alignment:
Q  1 ataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  29843648 ataattatcaatacatagatacgattattaaacatctactaaaacttatctcaacgggcaagaatgaatatgaatacgagtttattgtgaagataatcaa 29843549  T
Q  101 agaagtttccaaaaagatttacagttgcggattaccctgttggaaccgaatat 153  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29843548 agaagtttccaaaaagatttacaattgcggattaccctgttggaaccgaatat 29843496  T

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Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 29826493 - 29826609
Alignment:
Q  1 ataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaa 100  Q
    ||||||||||| ||||| |||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  29826493 ataattatcaatacataaatacaattattaaacatctagtcaaacttatctcatcgagcaggaatgaatatgaatacgagtttattgtgaagatagtcaa 29826592  T
Q  101 agaagtttccaaaaaga 117  Q
    |||||||||||| ||||    
T  29826593 agaagtttccaacaaga 29826609  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 29845947 - 29845872
Alignment:
Q  154 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 229  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29845947 ttttagatgcaaaatttgatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 29845872  T

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Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 29843470 - 29843395
Alignment:
Q  154 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 229  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29843470 tttttgatgcaaaatttgatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 29843395  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 29826685 - 29826760
Alignment:
Q  154 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 229  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29826685 ttttagatacaaaatttgacgatcgagtccagatggtggggatttatggaattggcggattgggtaaaacaacact 29826760  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 28150730 - 28150781
Alignment:
Q  224 aacactacatgacttgatagaag-catgggtaaagaaattgtacgacaagaa 274  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  28150730 aacattacatgacttgatagaagacatgggtaaagaaattgtacgacaagaa 28150781  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 29827549 - 29827595
Alignment:
Q  229 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaa 274  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  29827549 tacatgacttgatagaagacatgggtaaagaaattgtacgacaagaa 29827595  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 29842615 - 29842565
Alignment:
Q  225 acactacatgacttgatagaag-catgggtaaagaaattgtacgacaagaa 274  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  29842615 acactacatgacttgatagaagacatgggtaaagaaattgtacgaccagaa 29842565  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 28097071 - 28097025
Alignment:
Q  229 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaa 274  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  28097071 tacatgacttgatagaagacatgggtaaagaaattgtaagacaagaa 28097025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 28243341 - 28243399
Alignment:
Q  37 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagata 95  Q
    |||| |||||||| | || ||| ||||||| |||||||||||||||||||| |||||||    
T  28243341 tactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagata 28243399  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 28150445 - 28150494
Alignment:
Q  37 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttatt 86  Q
    |||| |||||||||| || ||||||||||| |||||||| ||||||||||    
T  28150445 tactcaaacttatcttattgggcaggaatggatatgaattcgagtttatt 28150494  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 28181668 - 28181744
Alignment:
Q  42 aaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaaagaagtttccaaaaagat 118  Q
    |||||||| | || ||| ||||||| ||||||||| |||||||| |  |||||| ||||| | ||||||||||||||    
T  28181668 aaacttatttgattgggtaggaatggatatgaatatgagtttatcgaaaagatagtcaaatacgtttccaaaaagat 28181744  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 28326024 - 28326088
Alignment:
Q  37 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaaa 101  Q
    |||| |||||||| | || ||| |||||||  ||||||||||||||||||| ||||||| |||||    
T  28326024 tactcaaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaa 28326088  T

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Target: scaffold0237 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 2330 - 2178
Alignment:
Q  1 ataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  2330 ataattatcaatacatagatacgattattaaacatctactaaaacttatctcaacgggcaagaatgaatatgaatacgagtttattgtgaagataatcaa 2231  T
Q  101 agaagtttccaaaaagatttacagttgcggattaccctgttggaaccgaatat 153  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2230 agaagtttccaaaaagatttaccgttgcggattaccctgttggaaccgaatat 2178  T

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Target: scaffold0237; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 2152 - 2077
Alignment:
Q  154 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 229  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2152 ttttagatgcaaaatttgatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 2077  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 17790839 - 17790882
Alignment:
Q  186 atggtggggatttatggaattggtggattgggtaaaacaacact 229  Q
    |||||||||||||||||||| ||||| || ||||||||||||||    
T  17790839 atggtggggatttatggaatgggtgggttaggtaaaacaacact 17790882  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 43503 - 43561
Alignment:
Q  37 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagata 95  Q
    |||| |||||||| | || ||| ||||||| |||||||||||||||||||| |||||||    
T  43503 tactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagata 43561  T

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Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 117339 - 117403
Alignment:
Q  37 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaaa 101  Q
    |||| |||||||| | || ||| |||||||  ||||||||||||||||||| ||||||| |||||    
T  117339 tactcaaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaa 117403  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 3281218 - 3281258
Alignment:
Q  231 catgacttgatagaag-catgggtaaagaaattgtacgaca 270  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  3281218 catgacttgatagaagacatgggtaaagaaattgtaagaca 3281258  T

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